Detailed information of XP_046842291.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813469.1:10118568...10133482
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02919
all species →		Topoisom_I_NEukaryotic DNA topoisomerase I, DNA binding fragmentFamilyInterproscan
PF14370
all species →		Topo_C_assocC-terminal topoisomerase domainFamilyInterproscan
PF01028
all species →		Topoisom_IEukaryotic DNA topoisomerase I, catalytic coreDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051062
all species →		FamilyDNA topoisomerase IBInterproscan
IPR008336
all species →		DomainDNA topoisomerase I, DNA binding, eukaryotic-typeInterproscan
IPR014711
all species →		Homologous_superfamilyDNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-typeInterproscan
IPR025834
all species →		DomainTopoisomerase I C-terminal domainInterproscan
IPR013500
all species →		DomainDNA topoisomerase I, catalytic core, eukaryotic-typeInterproscan
IPR013034
all species →		Homologous_superfamilyDNA topoisomerase I, DNA binding, N-terminal domain 1Interproscan
IPR011010
all species →		Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR036202
all species →		Homologous_superfamilyDNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamilyInterproscan
IPR048045
all species →		DomainDNA topoisomerase I, DNA-binding domainInterproscan
IPR013030
all species →		Homologous_superfamilyDNA topoisomerase I, DNA binding, N-terminal domain 2Interproscan
IPR018521
all species →		Active_siteDNA topoisomerase I, active siteInterproscan
IPR014727
all species →		Homologous_superfamilyDNA topoisomerase I, catalytic core, alpha/beta subdomainInterproscan
IPR013499
all species →		DomainDNA topoisomerase I, eukaryotic-typeInterproscan
IPR001631
all species →		FamilyDNA topoisomerase IInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10290
all species →		DNA TOPOISOMERASE IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0007059
all species →		Biological Processchromosome segregationInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03163TOP1; DNA topoisomerase IEC:5.6.2.1
DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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