Detailed information of XP_046847982.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813483.1:5528246...5545082
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF04003
all species →		Utp12Dip2/Utp12 FamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR051570
all species →		FamilyTBC1 domain family involved in cilium biogenesisInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR007148
all species →		DomainSmall-subunit processome, Utp12Interproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19853
all species →		WD REPEAT CONTAINING PROTEIN 3 WDR3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0030490
all species →		Biological Processmaturation of SSU-rRNAInterproscan
GO:0030515
all species →		Molecular FunctionsnoRNA bindingInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan
GO:0034388
all species →		Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14556DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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