Gene detail

Detailed information of XP_046848499.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813483.1:2035886...2039769
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR017964 all species →	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR030559 all species →	Family	DNA polymerase zeta catalytic subunit	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812 all species →	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016035 all species →	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_046848499.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.