Detailed information of XP_046848776.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813483.1:10003625...10011519
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01171
all species →		ATP_bind_3PP-loop familyFamilyInterproscan
PF16503
all species →		zn-ribbon_14Zinc-ribbonFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035107
all species →		FamilytRNA thiolation protein, TtcA/Ctu1 typeInterproscan
IPR000541
all species →		FamilyCytoplasmic tRNA 2-thiolation protein 1Interproscan
IPR011063
all species →		DomaintRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminalInterproscan
IPR020554
all species →		Conserved_siteUncharacterised protein family UPF0021, conserved siteInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR032442
all species →		DomainCytoplasmic tRNA 2-thiolation protein 1, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11807
all species →		ATPASES OF THE PP SUPERFAMILY-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0002098
all species →		Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0034227
all species →		Biological ProcesstRNA thio-modificationInterproscan
GO:0002143
all species →		Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0002144
all species →		Cellular Componentcytosolic tRNA wobble base thiouridylase complexInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14168CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1EC:2.7.7.-
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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