Genomic Location: NW_025813484.1:7487200...7489357
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002821 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16739 all species → | CARD_2 | Caspase recruitment domain | Domain | Interproscan |
| PF13676 all species → | TIR_2 | TIR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000157 all species → | Domain | Toll/interleukin-1 receptor homology (TIR) domain | Interproscan |
| IPR031964 all species → | Domain | Caspase recruitment domain | Interproscan |
| IPR011029 all species → | Homologous_superfamily | Death-like domain superfamily | Interproscan |
| IPR017279 all species → | Family | Toll-interleukin 1 receptor domain-containing adaptor protein, Tirap | Interproscan |
| IPR035897 all species → | Homologous_superfamily | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22662 all species → | TIRAP | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007249 all species → | Biological Process | canonical NF-kappaB signal transduction | Interproscan |
| GO:0032760 all species → | Biological Process | positive regulation of tumor necrosis factor production | Interproscan |
| GO:0032872 all species → | Biological Process | regulation of stress-activated MAPK cascade | Interproscan |
| GO:0034142 all species → | Biological Process | toll-like receptor 4 signaling pathway | Interproscan |
| GO:0035662 all species → | Molecular Function | Toll-like receptor 4 binding | Interproscan |
| GO:0035663 all species → | Molecular Function | Toll-like receptor 2 binding | Interproscan |
| GO:0043123 all species → | Biological Process | positive regulation of canonical NF-kappaB signal transduction | Interproscan |
| GO:2000343 all species → | Biological Process | positive regulation of chemokine (C-X-C motif) ligand 2 production | Interproscan |
XP_046850121.1.Genes whose expression across the transcriptome samples of Xenia sp. Carnegie-2017 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Xenia sp. Carnegie-2017, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
