Detailed information of XP_046854020.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813485.1:12396945...12403434
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01363
all species →		FYVEFYVE zinc fingerDomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR042234
all species →		FamilyWD repeat and FYVE domain-containing protein 1/2Interproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR017455
all species →		DomainZinc finger, FYVE-relatedInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000306
all species →		DomainFYVE zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46189
all species →		LD41958PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005769
all species →		Cellular Componentearly endosomeInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23532WDFY2; WD repeat and FYVE domain-containing protein 2-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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