Detailed information of XP_046855136.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813436.1:8976670...8983296
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01974
all species →		tRNA_int_endotRNA intron endonuclease, catalytic C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011856
all species →		Homologous_superfamilytRNA endonuclease-like domain superfamilyInterproscan
IPR006677
all species →		DomaintRNA intron endonuclease, catalytic domain-likeInterproscan
IPR036167
all species →		Homologous_superfamilytRNA intron endonuclease, catalytic domain-like superfamilyInterproscan
IPR016589
all species →		FamilytRNA-splicing endonuclease, SEN2 subunitInterproscan
IPR006676
all species →		FamilytRNA-splicing endonucleaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21227
all species →		TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000213
all species →		Molecular FunctiontRNA-intron endonuclease activityInterproscan
GO:0006388
all species →		Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0000214
all species →		Cellular ComponenttRNA-intron endonuclease complexInterproscan
GO:0000379
all species →		Biological ProcesstRNA-type intron splice site recognition and cleavageInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15322TSEN2; tRNA-splicing endonuclease subunit Sen2EC:4.6.1.16
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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