Detailed information of XP_046860490.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813488.1:7991374...7993623
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Gene family
Family typeMembership / link
Ubiquitin familyULD|UFD|RAWUL · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16207
all species →		RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043540
all species →		FamilyE3 ubiquitin-protein ligase RING1/RING2Interproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR032443
all species →		DomainRAWUL domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46076
all species →		E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0031519
all species →		Cellular ComponentPcG protein complexInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10695RNF1_2; E3 ubiquitin-protein ligase RNF1/2EC:2.3.2.27
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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