Gene detail

Detailed information of XP_046862379.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813504.1:488001...539262
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12335 all species →	SBF2	Myotubularin protein	Family	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR022096 all species →	Domain	SBF1/SBF2 domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18061	SBF1_2, MTMR5_13; myotubularin-related protein 5/13	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.