Detailed information of XP_046863644.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813526.1:17065607...17072785
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04003
all species →		Utp12Dip2/Utp12 FamilyFamilyInterproscan
PF12894
all species →		ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007148
all species →		DomainSmall-subunit processome, Utp12Interproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR024977
all species →		DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR052414
all species →		FamilyU3 small nucleolar RNA-associated WD repeat-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44267
all species →		WD REPEAT-CONTAINING PROTEIN 43Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000462
all species →		Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14546UTP5, WDR43; U3 small nucleolar RNA-associated protein 5-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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