Detailed information of XP_046864396.1 in Xenia sp. Carnegie-2017

Genomic Location: NW_025813436.1:6624757...6628508
NR annotation: no NCBI-NR hit recorded
Species Xenia sp. Carnegie-2017 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
Sequence data are not available for Xenia sp. Carnegie-2017.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013
all species →		KH_1KH domainDomainInterproscan
PF00098
all species →		zf-CCHCZinc knuckleDomainInterproscan
PF16275
all species →		SF1-HHSplicing factor 1 helix-hairpin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR004087
all species →		DomainK Homology domainInterproscan
IPR004088
all species →		DomainK Homology domain, type 1Interproscan
IPR036612
all species →		Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR045071
all species →		FamilyKH domain-containing BBP-likeInterproscan
IPR032570
all species →		DomainSplicing factor 1, helix-hairpin domainInterproscan
IPR047086
all species →		Homologous_superfamilySplicing factor 1, helix-hairpin domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11208
all species →		RNA-BINDING PROTEIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0048024
all species →		Biological Processregulation of mRNA splicing, via spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13095SF1; splicing factor 1-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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