Gene detail

Detailed information of XP_058941387.1 in Pocillopora verrucosa

Genomic Location: chr3:892968...900183
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059085404.2

CAAAAGaacaaacatggcggacgaGGACGTTGAGATGGACAATTTTTCGGAAGACAGAGCTGAATCGGCGAGTGATTTCGCTGgagatgatgaaaatgaaaagATGGATGCATATGACACACTGGAGAGTGAGCCAGAGATACGAGTGGACAGGAGCCTCACTGACAGTGATCTTATGATAGCCTTAGCTCAAGTGTCTGAGAACAAACACATGATGCCTGGAAATGGACATATTAAACGTGATCTTAACGCGAGTTTGAGCAGCAGCATTAGCAGCCTTGGTAGTAGTCTTAACAGCAGTGGATTACTCCTCAGTAAAGGCAAGGAAAGCACAGGTTCAGTGCCTAGGAAATCTGCTAGAGGAAAGCGTAAATTGGACAGTAGTCAACAATTATCCTCatctaaaaaaacaaagagCGATATACCTCCTTCCCAGAAACTGCCACCCCATGGCTACCCATTAGAGCATCCTTTTAATAAGgatGGATACAGATATATTTTGGCAGAACAAGATCCAAATGCCCCTCTAGCAAATATGGACATGGAATTCTGGGCTGGGAAACCCATTCCTGGAGATCTTTACAGAATTAAATTACACAAGGAAGTTCTTCTATCTATGAATGATAGAGcTCCTCAACTCAAGTTATCTGATGATAGACTATCAGTGACAGGAGAAAAAGGCTACTGCATGTTACGTGCCACTCATGGTGTCTCCAAGGGAAACTGGTACTTTGAGGCTACTGTAGACATACCTCCAGATACAGCCACAAGAATTGGCTGGTCACAGCTTTATGGAAATCTACAAGCTCCTTTAGGTTATGATAAATTTAGTTATTCTTGGAGAAGTAAAAAGGGTACAAGATTCCATGAGAGTAGAGGCAAACACTACAGTGATGGATATTCAACTGGGGATGTAATAGGGTTTTTTATCAGTCTACCACAAAATGACAGACATCCAGcggGATTTCTTCCTGCGACGTATAAAGATAAGGCATTAATAAAGTTCAAAAGTCATCtttactttgaagaaaaagatcACGTGGACAAGGCGGAAAAGAACCTAAAACCTGTGCCAGGAAGTCAGgtaaaattcTACAAAAACGGTGTTTGTCAGGGAGTGGCGTGGCAGGAGATCTATGACGGAACCTATTATCCGGCTGTATCGCTGTATAAGAATGCTACGGTCACCATCAATTTCGGGCCTGATTTTAAACATCCACCACCAGATGAAGAATTCCAACCGATGAGCTTTAAAGCTATGGAATTTGCTGTGGAACAGAGTTTATCAGACCTGTTGTCCCATGTGGATTCACAAGACAGACCCGTTCCAATCCCTGAGAAAATCCTAGTCCCTCCAAAGAGGAAGTGACGTATATTCACCTTCTACCGCTGACAGCTTCAGTATTGCCACGTCACATTCACCAAATGCTTTGAAGTGTTTCCAGACGTCAAAGACAGAGACCAAACTTGAGAGGCGCTGGTGAGGGATTTGACCGCCAGAAAGCAGCCATACGTTGGTCTTGCAATGTGCTCGCCGGAAAAGTCCAGTCAAGTATTAAATTATGTCAGCTTTTTTTCGAATCCTTTCAAGGATTTTGTGCATCATTTATTTGACTGGAAAGATGCAgttactttttttgtgtttggaACAAGATAAGTATTTCGTACGCAGTATAACACTTGTAAAGTATGTCGTACGGTTCTAGTGGTGCTGTTTTGAGCATAAACAATACAGAGTTCAAAAGATTTGTGAACAATTGCCATTTACAAATGAGTGAATTTTTATATtctaatttctttctcttccaatgatattttttattggCTTTTTGAGACGTGCTCTCGTGTTTACTTGGCGTATTATTCAGTTTAGCCAAACCAGCAATCATTTGTACCATAAGATTCAGCATAAAGTAAGCTTTTATACATGTTACAATGCGCATAATTAGGGTCTTTTTTTATCTAATAAAGCACAATTTCTCTGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR037353 all species →	Family	Histone methyltransferase complex subunit ASH2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10598 all species →	SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14964	ASH2; Set1/Ash2 histone methyltransferase complex subunit ASH2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.