Gene detail

Detailed information of XP_058942395.2 in Pocillopora verrucosa

Genomic Location: chr6:24092588...24097497
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059086412.2

ACTACTCGAAAACCGTGAATAATTGATTAACGAAACTAAGTGCCGATTGTGTTTGTGACAATAGGATCACGTGATCTAACTTTCTTGGAAAGCGCCTAGCGGTGGGAAAGTCTTACTGTGACATTTAAGGAGGAACATGGCttactttttttcgattttcgtTAAAATTTTTGGTATCGTGGCCTGGTTTCTCAGCCGGGATATTCCTAAGGGATTGCCGGACGATCAGCTAACGAGTCTACAAGTGAGCGGTGTTAGTATGGATATCTTGCGCTTCCTGGGGTATACGGCTTCTTTATTTGGGGGGGAGTCTGCAATCGAAAATGTTAATTGGGGACTTCAGTGGTTATCATGGATGCACCCTAAGGATAAAGAATCAGAAAATTCATTGGAAATTTGGGATGAAAAGATAGCCAACATCCCTGTACGTTTTTATAAACCAAAAACCCTTGGCAAAAAAACTACTGGTGTGGTTTATTTTCATGGCGGTGGATTTACTATTGGAAGTGTTGATCAGTTTCATCTATTCACCCTGCTGTTAGCTAAAGAAGCAAATGTTGTGCTGGTTTCTGTTGAATACAGATTAGCACCCAAATACACTTTCCCTGCCCAGTTCCATGACAGTTATGCTGTTGTTAACACCCTGCTGGCCACTGGAGTGAAATATGGTATTGATACAAACCGTATTATTGTTGCTGGAGACAGTGCTGGTGGTAATCTAGCAGCTGCAGTTGCTCTCAAGCTTCGAGATGAGGACAAACATCTGGCAGCTGAGATTCTCATCTACCCTGCACTTCAGTTCATGGACTTTTCACTTCCCTCGTATCAAAACCATGGCTCTCGACTCTTGTCATTGGAACAATTGGCAGGTTACTGGTCATATTACATGACAGGATCAGCTGACACGGTCTCATCCTTTTTGGCAAACAATCATTCCAGGCATCTTCGCAACACAAAGTACTCCTCTTACATTGGGGTTGGTGAAAAGGGacaacaaaatcaacagaaGAAGCCATTAGGTGGAATTCCAGTAATTGTTTTAGATAGTCTGGTGGACTATAGAGCATCACCTTTAATGGCAAATAGTTTAAAGGGGCTTCCCAAGACGTTAATCATTACATGTGAATTTGACATCTTAAAGGATGATGGTCTGTTGTACAGGGCTCGTTTGTTGGATGCTGGTGTCAAAGTGACTCATTTAAACTACATGAGCTACCACGCCTTTTTGGCAATTCAAGCGTCACCTTACTTTGTAGCTGAGGAGTTTAATCAGGCATTGAGAGATATAGTTGACTTTGTGAAAGGAGTGTAAAAAAGTCTAAAAATACGCATAAATTTGAATAGCAAAACATTTCAGCCATTTTTGAAGAAGACTTTGGTTATGAGAAATGGTTGTTGTAAATGTACGCTTCTAAAAATCTCCGGACTGCTTAGTTATGCTGACATACGTGACATAGAACTTTCAAGAACATTTCATCACGTCACGCAGTCATTACGTAATAGTACTTAAATAGTTCTTTTGTAAGcctctggaatgttccagaacactttgtgaatgtatataaagaCTCGGTtaggtagtagtagtagtatttattgttgttgttaggGGTGACCGACTGTTTAGAAAGCTATGAGAGAGAGTAACAGTAGAAGAttgctaatttcaagaaacGTTGTGGGAAACCTTGAGTTCGGCTCAGGGGTGAGCTAAGATATTGActgtagtgggcttaagtaagtttatcGAGCATAAGTACTGTACTGCCTTCAGTAGTCGCTTGTTATTAAGAATATCAAACACTTGTTTATTGAAGTTGTTAAGTTTGtaggattgtagtgtttttctgtcggttagattatatCCATTCGTAACACATTGCATCCTCTTTGTCTTGATTCACATCTTGAACAGGGTATAAAAAAAGTATAAATGTCTAGTTAAGTTTATTTAAGCAAACAAttttatgggttttttttttaagacattGCATGATCCTATCAATCTTGATTCATTCGTTCAAGAGAAACATTTTTGACACGTTTTGAAATGTTAAACTTCCGCACATGAGTAACCCTGGACTAGACTAACtctcagggtcttaaaatacTAAACTGGAGGAGAATGTGCTGATTTTGCtctgacatctgcaaatggttagacattctagtcttctcggataaggacgaaAACTGATGATCGGAGATAGTAAAAGAAGACGctaaagaacccacacacttctTTCAAAGAGTAGGAAGCCCAGCTCCCAGAGTTGTGATCTGGCCTTGTATTCcgaaaaaaaacttctaaacTGGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07859 all species →	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033140 all species →	Active_site	Lipase, GDXG, putative serine active site	Interproscan
IPR017157 all species →	Family	Arylacetamide deacetylase	Interproscan
IPR050300 all species →	Family	'GDXG' lipolytic enzyme	Interproscan
IPR013094 all species →	Domain	Alpha/beta hydrolase fold-3	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48081 all species →	AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0052689 all species →	Molecular Function	carboxylic ester hydrolase activity	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058942395.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.