Gene detail

Detailed information of XP_058942744.2 in Pocillopora verrucosa

Genomic Location: chr2:2633844...2645673
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059086761.2

ATTAGCATAATTACTTTGAGCGTTAATTATCTATAACGTGAGTTTGCATACTGCTTGAATCGCTATTGAATGAGCTTACAATAATTTGTTTTCGTTCAATAATTGAGGTTTTCCGTTGAAGGAAGTGCGCCGGTATCTTGTTCAATTGTCAAAGTCTTGCTACACGTGCAAAGCCTTCGTGATCGGGAAAAACCGGAAAGAGGGTATTGCTGGATTGCAGTCACGTTGTTTACTTGACCAACTAGCGCGGTGAAGTTGTTGTTATTTCGATTTTTATAACCGGAGATATTTTGAACCGGAATTGATCCTGTTCACAAAAGATGAGTTGACAGGAAATGCCAACCACGGAGCAGTTTCTCCATGTGAGTGAGCCGAGTCGACGAATCACGTTGCCAACCGCGGGAAGTCGTAAATAGTAGGAAGGGTACGAGACACCTCTGCTTCAATTTACGCGCGTTTTTCTGTGGATTTTTTGTATCTTATAACAATGATGAATGGAGATTTGGGGCACTCATCGGAACTTCACATTTTGGAGCACAAGCTTCGCGTCTCCAACATTAAGAAAGATGCAATTTCTTTATACACTCACGCGCTAATAAAAATTTCGTTGCTACCTCGATCAAGAcctaagtttttcagttttacgGAGACCAGAGATGGTTACACCATAATCGTGGAGGATGATCTTTGCAAAGAGCTTCCACAAAGTGAGAGCATTGACATGCCTGACCTTATCTGGCGAGTTCTGACTGTGTCTGCAGGAGCCTATGGAAGCCATCAGCTGACTGGAATCAGTAGAATTGTTAAAACAGTCATTTCTCCCTTGGCGGATTTTAAAATCTCAGTTCTGGTCATTTCAACTTATCAGTCAGACTATATCTTGgtgAGAGAGAAAGATCTTGAAACTGCCATAATGTGTCTTTccgaaaattataaaatttttaaagacaGTGGATCAGGACTTGAACCTGTGACTCTTTCTATTAAGGATAGATTGGTTGGAATGAACCAAATGAATGAAAGGAAAGCAGATGAGCACAGACCAATTATTCACCCATTCACATGTCCAATGAACAGATTTCATGTGACCAGTCTAGATTTTCGAATGCTACCAAGCCTCACTACCACCATTCTTGAACTGATGTTCTAttctgaAACACCTGATGATGGACGATATGAACCTTTCTTTCACATCTCAATTGTTGAAGGAGACATTTCATTAGTTTTAGACAGTGAGGCTTTGTCAAGATTTCCTGAAGGTTCACTATACACAAACACCAATGATGAGGGATGGAGAATGATTCGTGTTGGAGATGACCCCCTAGGATTTGAGGAGAGTGGCATAGTTGCTCAGTTATCTGAACCATTAACTGAAGCTTCATGTAGCACTTCTTACATCTGTACTTTCCTTTATGATCATCTTTTGgtTCCTGAGAGTGAAGCTGTCAAGGCAATAGAACTTCTTAGTTCTCTACAAGTATTAAAGGATTGATgagaaatgttattttattgttaatttattgTTCATTTAGTTGAATTGGATAGATTTTTAATTGTGTGTCTTAAATTCATTCATTATTGTAATTACAACTTATCCTCGACAAGTTTATTTAATCATCATCAATATGGGTCAGGCATAATGAACTTCCATTGTTTACGTTGCTGCCAGTTCATCAACACTTGCATATTATACCTTTTGTATCACacaaaaggttttttaattttaaccctctaaccctTAGGGGCTGGTTTTTTACAGGGGGTATAATCCAAACTTCGTCTTTACGCAGGCAGTGGGCTTCAGGCTTTGTCTTTAAGAaggttgatttaattaaattaatgtcCTTCTATTGTTAGCTTTTGGCCATCTAGacactctttaaaaaaattaaatgttcagataaaaggtttggctaaattgaagatggcatCTTCAGATTGTCTAAATAACCGACACTAGGAGTGGTCAGtgcctaatttctccttacagtaatatttACCCCTGAATCATTAATCAGGATCATGAGAATTTCtacaaaggaaatgattgccagccttagaattttatttgttaaccctttaattcccagatcaaatttgtaattctccttactatcaaccatacaattcttataacattagcttagagaatttagtattagatcaactaattatccccaaaattgatatttttctgtattctcataacctatctggttgatattgtactgatactgtaaggagaaattctgtcttgtcatccgtgggagttaaagggtgaaaggaattctcctggtcagtaccaaaggaaatgtacagagaagaGTGTGAAAAAATAGgaattgatgttagggtgtaaagggttactgCTTTGCATGATACAGCAGTTcaaattattttacagtttGTGTACATTGTGTATGATATGTTGAACTTCTTGTGTAGACCTTTGGTCAGATGTTTTTATCTGAGTTAAAAAACATTGTGAGAGTGTTAGTAGGTTATAGAGTTCTAAAGCTGTCATTTTCTCAAATCGGATGTCAGAGTTCCGTGGTATAGCTACAGGTAGATATGCCTTTAGAGGTGATTTGTTGCCTCTTTAGATGAGTGTTACATCTGTTTGAATCACTTATCATTCATcattaaattttctaaattgGAGTGGATATTGgtaattattatttatattatattacatatttgtattttcaaattgtATATAATTTATTCTAATCAAAACTTAGGCAAAAAGGGCATTTTGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18700 all species →	Castor1_N	Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain	Domain	Interproscan
PF13840 all species →	ACT_7	ACT domain	Domain	Interproscan
PF21389 all species →	CASTOR1_ACT-like	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051719 all species →	Family	Cytosolic arginine sensor for mTORC1	Interproscan
IPR026249 all species →	Family	CASTOR family	Interproscan
IPR040778 all species →	Domain	CASTOR1, N-terminal	Interproscan
IPR027795 all species →	Domain	CASTOR, ACT domain	Interproscan
IPR049479 all species →	Domain	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Interproscan
IPR045865 all species →	Homologous_superfamily	ACT-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31131 all species →	CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_058942744.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23081	CASTOR2; cytosolic arginine sensor for mTORC1 subunit 2	-	mTOR signaling pathway	ko04150	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.