Gene detail

Detailed information of XP_058943360.1 in Pocillopora verrucosa

Genomic Location: chr1:25968624...25978451
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131771565

ATGTCGTTCATATTTCGCAGTCCCATCAATGCTGAATTCAAGCAACGGCAAAGTCAGCTGTTTTGCGAGCAAGTTGAATCTGACTTTTGCTATGGGAACTATAGAGAACTGAAATTTTATCTACATAAGTATTGCAAAGCGAGCGATCGAATTTTAGCAACTGGCTGCAAATCGACAAGTGATGGAGAAACTCTCTTTATCGAAGATTTGTACGATGCAGGCTTCCATGCTGTCGTTGGGGTGGACAGCTCTGAAAAGAACATTTCTACTGCAAAAGAAAGGAACAAAGAGAACAGACCTGAAATTCAATTCGTTGTGGCGAAAGGCTTTAAAATTGATGACGAAGCTGATAGTTTCAATGTACTAATAGACAAGGGAGAACTGGACATGATACGTAAAGAACAATCTTCTTTTGAGTTATATGATTTTGCACAACATTTTGAAGCAGTACAACGCCTTTTGAAAGTTGGTGGCCGATATATTTGTTTTTCATTGGCAACAACAGATGTTTTGGATAAACTTCTGGTCTATTTTTCATCTGGATGGTTCTTTAGGGTGCACATGCTGAACACAGAATTACTAGATGGAAAATTGATTTCATTTCCCTTGTTTTGTTTTATCTTGACAAAGACGAAATCTGCAGGTTTATCAAGTCAGCCTTTAAAAATCATTGAAGTATGCCTTGAGGGAACAGAAAGCATCCAGAGATTGAATTGTTTTTCGGAAGTCAAGACTAATCTTCAAGAAATCCAGCAATATTTCATGACAAGGAAATCTCTTGAAAAGTTAAGACCCAAGCAACACCTCAATGTAGACTTGTATTTATCATCTGGAGGTCAAAAACAAAGAAGTGAACCTCGTTATTCAATGGCAATTGTAGACATTCAACCTTCATTGGCAAAGAATGGAAAGTTTGCCATATTTATTGTACCACAAGGAAGGGAAACAGAATGGTTATTTTCGTCGAAAGAAGGACAAACAGAACTTAGCACAAATGCGGGTTTTGAGCGTGTTGTGATTGTGACTCTTGGGAGAGGACACACCTTTACTGACATGGATGCTATTAAGGGTGAATTGTCAACCAAAGTCATGGAACTTGCTCCTCGAAAACTTAGCCGTAATGCACAGGTACCCTTCCTTTCTGTCGGCGAAGATCTTGGAAACCGTGTAGTTTTGTATGAAGGAAATTCACAGTTGAGTGGAGACTATGTTGTGGAAGATGTCGACGGGGATGGAGGACAGAAATTTCGACGACTCATTTTTCTTAGCAACAAGAACGTAGTGCAGTCAGAGGCCCGACTAATAACAGACAGAACAAATGTTAAAAAGGGTAAAGGAAAACAGAAGGCAAAGGTTCATAACAACAGCAGTCCCCGAGTGGATCATGGGTATTTAGCTTGTCAGCATCACAGAGTGATTGTCACCGGCCTGGCCTGGATCGAGGGATTTTGTACCACAGACGAAAAGAGGAAAGGCTTGATAGTTGGCCTCGGTGGTGGAGGACTGGCAATGTTTCTGCATCAATACTTCAAGAAGCTTTCTGTAGAGGTCGTAGAACTAGATCCATCCATTTCCGAAATTGCCAATAGTTGGTTTGAGTTCAAAGAAGATGATAGAATGCAAGTCATAATTGAAGACGGATTGAAATATATTCGATCCAAAGAGAGCACTCCAAGCTATGATGTGATTATCTTTGACGTGGATTCTAAAGACACGAGCGTAGGAATGAGTTGTCCGCCACAGGCCTTCGTGGATAGAGCGTTTCTCAAACAGGTTCACTCCCTGCTATCTCCTTCAGGAGTGTTCGTTTTGAACTTGGTTTGCCGCAATACCTCCCTGAGAGAGCAAGTTGTCAGCGATCTTCGGGCTGTTTTTCCTGAGCTTTACACCATCGGAATTGAGGGGGAAGTAAACGAGATCGTGATCGCTCTTCCACAGCTTAGATACCAAACGGACTGTGAAGAGAAGAAATCCCTTGACGCTCTTAAAAATATTTTTCACAACTCAGTCATGAAATTACAGAAATTTGCCAAGAGTCAAAGTCATTCTTGGGATTCAACCCTTGATTTGTGTCAACTTGTAAAAGAAGTTCAAATTGTATAG

Transcript

rna-XM_059087377.2

TCAGGCAAAGCGTGGACGGGATGTCGTTCATATTTCGCAGTCCCATCAATGCTGAATTCAAGCAACGGCAAAGTCAGCTGTTTTGCGAGCAAGTTGAATCTGACTTTTGCTATGGGAACTATAGAGAACTGAAATTTTATCTACATAAGTATTGCAAAGCGAGCGATCGAATTTTAGCAACTGGCTGCAAATCGACAAGTGATGGAGAAACTCTCTTTATCGAAGATTTGTACGATGCAGGCTTCCATGCTGTCGTTGGGGTGGACAGCTCTGAAAAGAACATTTCTACTgcaaaagaaaggaacaaagagAACAGACCTGAAATTCAATTCGTTGTGGCGAAAGGCTTTAAAatTGATGACGAAGCTGATAGTTTCAATGTACTAATAGACAAGGGAGAACTGGACATGATACGTAAAGAACAATCTTCTTTTGAGTTATATGATTTTGCACAACATTTTGAAGCAGTACAACGCCTTTTGAAAGTTGGTGGCcgatatatttgtttttcattggcAACAACAGATGTTTTGGATAAACTTCTGGTCTATTTTTCATCTGGATGGTTCTTTAGGGTGCACATGCTGAACACAGAATTACTAGATGGaaaattgatttcatttcccttgttttgttttatcttgaCAAAGACGAAATCTGCAGGTTTATCAAGTCAGCCTTTAAAAATCATTGAAGTATGCCTTGAGGGAACAGAAAGCATCCAGAGATTGAATTGTTTTTCGGAAGTCAAGACTAATCTTCAAGAAATCCAGCAATATTTCATGACAAGGAAATCTCTTGAAAAGTTAAGACCCAAGCAACACCTCAATGTAGACTTGTATTTATCATCTGGAGGTCAAAAACAAAGAAGTGAACCTCGTTATTCAATGGCAATTGTAGACATTCAACCTTCATTGGCAAAGAATGGAAAGTTTGCCATATTTATTGTACCACAAGgaaGGGAAACAGAATGGTTATTTTCGTCGAAAGAAGGACAAACAGAACTTAGCACAAATGCGGGTTTTGAGCGTGTTGTGATTGTGACTCTTGGGAGAGGACACACCTTTACTGACATGGATGCTATTAAGGGTGAATTGTCAACCAAAGTCATGGAACTTGCTCCTCGAAAACTTAGCCGTAATGCACAGGTACCCTTCCTTTCTGTCGGCGAAGATCTTGGAAACCGTGTAGTTTTGTATGAAGGAAATTCACAGTTGAGTGGAGACTATGTTGTGGAAGATGTCGACGGGGATGGAGGACAGAAATTTCGACGACTCATTTTTCTTAGCAACAAGAACGTAGTGCAGTCAGAGGCCCGACTAATAACAGACAGAACAAATGTTAAAAAGGGTAAAGGAAAACAGAAGGCAAAGGTTCATAACAACAGCAGTCCCCGAGTGGATCATGGGTATTTAGCTTGTCAGCATCACAGAGTGATTGTCACCGGCCTGGCCTGGATCGAGGGATTTTGTACCACAGACGAAAAGAGGAAAGGCTTGATAGTTGGCCTCGGTGGTGGAGGACTGGCAATGTTTCTGCATCAATACTTCAAGAAGCTTTCTGTAGAGGTCGTAGAACTAGATCCATCCATTTCCGAAATTGCCAATAGTTGGTTTGAGTTCAAAGAAGATGATAGAATGCAAGTCATAATTGAAGACGGATTGAAATATATTCGATCCAAAGAGAGCACTCCAAGCTATGATGTGATTATCTTTGACGTGGATTCTAAAGACACGAGCGTAGGAATGAGTTGTCCGCCACAGGCCTTCGTGGATAGAGCGTTTCTCAAACAGGTTCACTCCCTGCTATCTCCTTCAGgAGTGTTCGTTTTGAACTTGGTTTGCCGCAATACCTCCCTGAGAGAGCAAGTTGTCAGCGATCTTCGGGCTGTTTTTCCTGAGCTTTACACCATCGGAATTGAGGGGGAAGTAAACGAGATCGTGATCGCTCTTCCACAGCTTAGATACCAAACGGACTGTGAAGAGAAGAAATCCCTTGACgctcttaaaaatatttttcacaactCAGTCATGAAATTACAGAAATTTGCCAAGAGTCAAAGTCATTCTTGGGATTCAACCCTTGATTTGTGTCAACTTGTAAAAGAAGTTCAAATTGtatagaggagaaaaaaaaaatttaacgaaCAATTgggttgttgctgttgttgcttcATTGCGACATGAAACTCTACCTCAGATATTCATAGGATTTCTCTCAAGTAGAGAGAATTGCCATGGAAAGCGTTAAGTCAAGTCCCAAAAGCCCCTGAGTTGTTATTTGACacagaaaataaatgaactATAGAGGGAACACAGGCATGTAAAGAACAAAGTCTACAATTTTAATGCTAAACATCCGTTGTTGTTATACATCGCGaaataaacacaataatttacaaaagaaCTCTAAATCTGCATTACACCGAGTGGTCCGATAGGTCCAAGAAAAGGAAAGTCTGAAAATAGAAAAGATAAGGAGCAGTTTAGTGTGAGGCGTTTCAATGTTTGAAGTCTCTTCGAAAGCAAGACAATAACAATGATAGGATTATGCTTTGAACTGCGTTAAATAATACTGAAAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051419 all species →	Family	Lysine/N-terminal Methyltransferase Superfamily	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12176 all species →	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_058943360.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25166	EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.