Gene detail

Detailed information of XP_058943393.2 in Pocillopora verrucosa

Genomic Location: chr1:25936428...25939758
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059087410.2

CTTGTTCAGCCCCTTGGTACTTTTACTGCTTTCTTCTTCACTCTTCTTCTAAAGTGGAAATATCCTtgataaacaaaacagagaaaaacagATTACATAAAGGGAAAGCTTTGAGGAGAGCTGCTAGGTAAGAGGACACTTAAGTGTGAAGAACAGTTAACAAAAGAAATGGAGGGTAATAAGTCGAGGGAGTGGCTTGAGAAGTATTACTCACCTAGCCGGTGGAATAAGCGCATGGGAGCAGACAAAGTAGTTCAGCATTATTTGAAAGTTTGCGGTGAATGCagtgaagaaacaaaacaaagtttgAATGTTGAACTGAATGTACCTTATGGGGAAGGTAAAGCCAAGATGGATGTATTTTATCCCCCACTGAATGACCATGATAGTGCTCCAGTCATTGTGTTTATTCATGGTGGTTACTGGCAGCAAGGTAGTAAAGATTTGTACAGTTTTGTCAGTAATTCATGGACAAAAGCTGGATGTATTGCAGTAGTTTTGGGTTATAATCTTGCACCAGAGGCCAGTGTGGAACAGATCATCACTGAAATCCAAGCTGCACTAGAGCACATTGTTGTTAAGTTTCCTAaatcaaaactgtttttatGTGGACATTCTGCTGGTGCACACTTATCTGCCATGATGGCACTTGCAAATTGGAACAAGGGTGGGTTAGTTTCACAAGCTGTTCATGGCATGTTTTTACTCTCTGGGATTTTTGACTTGGTTCCCTTGGTTAACACTAGCAATAATGATGCATTAAAATTGGATGCAGATTCCGCTGCAAAAATTAGCCCCCTGACAATTCTTAAGGAAGTATCTCCCACAATCTGCTGTCCTACACTGGTTGTGGTTGAAGAGCATGGATCTCCAGAGTTCATTCGGCAGTCAAAAGAATTTGATGAGATCTTGAAGTCACATGGTGTACAAAGTTCCTTTTTATGGCTTTCTGGAGTAgatcattttaatttaattgaaaacatgGCTGATCCTGAAGATCAACTttgcaaagaaattttaaaagttgtcctTAAACAATCTTAATATCTTTTGACAATGTTATTtcgaagttttattttaaaatgctctTCCACTAGGCAGTGGGCtgtttaaataataattttttttcagagaaaactgCACTAAGgctgaaaatttatttatacacTGAAAGAAACTAGTCAGAGTGATTTTACTTAACCCTTGAAATAGGTAGTAGAATACTAGGTGCACTATTATGCACTAATTACTTTGTCTTCCTTTGTTTGCAAGTGGCTGTTTTTCAGTAGATGCTAGTATCTGTTTCACAGGTTAAGTAAGATCACTCCATGCTGTAATCAATTATGCACAAAAATTAACCTACAATATAAGTACTATCTCAACTCCCTTTAGTTAGTCCCCACAAAGTTAGAGCAGACTTGAAAGAGTTGTGATGAAATGGTAAATGTTTTTTATAGATGTCAAGTAAAGAGACAATAGTAAGAATACTAAAAGATTgttaggcagtagtgaaaatttgaaacatgAGAAAAAGAGTTTCTGACTTTTTCCACTAAATTTGATGTGTTTGAATTACAGATGAAGGACTTCTAACCTTTCTCTTATTAATTGACCTACCCTACGAGGCAGGTATTTGAGAGGAATGGAGAGGGAAAGATAGGGCGAGAATGTGATGGGCATGCATGTGATGGGCATGCATGTGCCAGTACTCATGTTCCTTGCTTAGCCCCATCCCTTTCCTTCCTCTTTAAACTCTTGTCTTGCAGTTTATCATCAGTGACCCACATATTATTTCTCCTTATTAAATCAGTGCTCAAgttcatgaaataaaacaagCTAAAAGGGTGTCATTAAAAGAATCTGCTACCTCACCTCCCCAAAGCAGGCACCCTCATTACAAGGCATGGTCATTAAACTGTGCGATTtactaattataattattacaatagAGAGGAGAAGTCATTACGTCACTTTTCCATGGTAGCAAAATTTCTGGATGACAACATACCGAAAATTCACTCAAAAAGAGaatttgcaaatgaaataatcatGTTGCATTCCTGCAACAACAGCTAAGGGGTGATGCATATGcaaagttgttgtttttctaaTATAAACTTATTGCTTTTAAACTgttctcgttgccgtcgccaTCGTCGTTGCTTAAAATCGCTATAGTTGTgattcagaaatttttttaccatgGTAATATGATGTCACACTTCTCCTCTCTAGTCATTTTTGTGCAAATTTAAAGACATTTTCGGAATGGATTTTAgtactgatttatttcaatatcCACTTAAGGGAGGTTATTTTAGCTTCTGTAGACCCTGTCCTGAGAAGGGTGTCTACATTGGGTTACACGTTCAATTGGTCTAAAATTAACTTTGGTGAAATTCACATATACCAAGGACTAGACTGGGCatttccctctctctctcccatAATTTTCTCTTGCTGAAAATCATaatagcaaaggaaaaaatagggAGAATAGTGTGAGGAATGTGCGTGTTCTtgatattttggttttcattaTGATCAAGCTCATGGAGTGGAGTAACTCCATATTTGTTTGCCTCTCTATGGTTAAGCTCCGTCCCAAGGTCCAATACCATATATGTATAccatttttgagagaaaaggtACCCCTTTTGTATACCTTGTACTGACAAATGGTACCCCTTTTACATAGCAAGTTGTGAACTTTCCATCTATTTTAGCTGCTGTAAATTAACCGTTTGTAAAACATGAGTAAACTACAAAGCCAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20434 all species →	BD-FAE	BD-FAE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR050300 all species →	Family	'GDXG' lipolytic enzyme	Interproscan
IPR049492 all species →	Domain	BD-FAE-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48081 all species →	AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01432	AFMID; arylformamidase	EC:3.5.1.9	Tryptophan metabolism	ko00380	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.