Gene detail

Detailed information of XP_058944167.2 in Pocillopora verrucosa

Genomic Location: chr3:26571140...26576857
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059088184.2

TTGTTGTATCAGGACGAAATGGCGATCGTAGTTGTGGTCTAAAGCTGTAGAATCTCGAGATCTAGCTGAGTGAATTTACCGCGAGCTTGTGCCTGAAGACTCTTGTACATAGATCATAGTGCGCAAGAAGTAAAAGCTACATCTTCCTCGGAGAAATTTTAGAGGAAAGCAATCGTTACATGGTTGCTTGGTGATGTTTTGATCGCGTCCATAATTTTACCGAGCAGATCACTGCAGGAAGGTGGCTTATCAAAGCTTTGACTGCAAAGAATCTACATACGATCCGTGAAATTCCCGTGAAAGATGAAGAAGTCCTCATCAAATCTGAATGCTTCTACTCCTAGTGAGATGAGAAGCGAGACGAAAGCAAGGGACCATGAAAACAAAGTTATAACAGAGAGGATCAACCTTGCAGAGAGACATTTCAGCATGTTACTAAAAGATTTTACAGCTTTTGCTACAGGACTGCAATCCTTGCAAGAAAAAGGCATGAAACTATCGAAGAGTGTAGATATCTTTGCTGATGATGAGTACCCATCAATGAAAGCAAGTTTAGGTGGTATCAGTGAAAGTATAGCTGCAGTGCAGGACTATATGGGAGCCCAGGTAGACTTCATACAAGCAAAGGTTTCTCCCCCATTGTCCTTGAATGCCACAAATGTCAAACATGCCAGAGAATATGTCAAGGAACTGGCTGTCACTAGAGAAAAAGAATTAATAAAACGCAAAGCAGTGGATAAACTTAGGGTCAAAGAACCAAAGAACAAGGGAAAAATTTCACAGGCTGAGCAGGACCTGCAAAAGTTAACTGTTGATGCTAACCGATCAAGACAGACACTGGAAGAACAAATGGTggaatttgaaagaaagaagattGAAGATATCAGGTTGgtatttagcaatttttttcatggtcAAATGTTGTTTCATGCAAAAGCACTGGAGCTCTATACAACTGCATTTCAAAGGTTGAGTTCCCTGGATGAGGAGCAAGACATAGAGGCATTCCAGAATGACCTTCATCCTGCATCATTTCCCTCTACCCTGGATGTGGCGAAAAGTGGTTCTCAGACCTCGCTAAACCGATTCAGCTCTCAAGGCTCGATGGGATCGCAACAGTCTTTAAACAGAACGGGGAGGAGTGACAGAGGTGTAGATGGTGACGAGGATACTAGCGATTTCGAATGACAGACTCTTCCTATTGGCTGAACAGAAAAAAGCACGTGCATTGGCTGAGAGAGGATTGTCAATGTAATAAACAAAGCAAGAACAAAGCATCAGTCTTTGAGAGACATAATTTTGAACCCTGTATTTGTCTTTAAGGCTCTACTAAACCTCTGCTGAGGGCTTGTTAATTTCCAGGGCTTTTAAATAGGGAGCTTTTCAGAGTGacggagagagagagagagaaggaggGCTCACCAAGAACTAACTCATGGAGCCGAACTGCGAGTCGTTACTTTTCCTCTGACCTATGGTTAGCCTCGATTAATATCGAGTACTGCATTTCTCTGTTAAGAAAAGCTACTTTGAATAAAACAGAAACTGACAAGACAACTTTATTCTAAAACGTAACCTAGCCTAGATGAACAGCTCCTATTAGATAGGAGGAAGAGACATAAGGCTTATGACTGAGGAAAGAGAGGCTTATTAGAGTGATTTCGGTATtagatatatatttatttattcattttttaaatgtattaAGAACCAGCCATGGACAAAGTTTAATGCATGCTATTACGTTAAAACTTACGCCGTCACGTCTTCTCGCGAAGAATGGGTAACTtccaagacttttttttttctcttggatgATTGATTCTACTTCGCAATATTTTTCACTCTCATTTGGCTAAACCCAGGGGGTTGCTAAGGTCATATATTATCATATGAACATATTAACAttgtttgaatcatttatttatgaatttatatttttttgtatttattttttgttttcacgaaagttttgtattaaaaaaaagatattgtcACCTTAATTTAAACCTCACATCGAAGTTTTGTTACGCTTCGTCCACTCTCACACGGAAGTAAGTAAGTGCTTTGATAATTGACGgtggaaaacttttaaataccCTACTTAGCCTGTTATACATGCAGAGCATGTTTCTTCTTTACCTAATCGATTTATATAGATTGCATGGGCCGCCTACTCAACTACGATATCTTTGTGATGTTTTGGAAACTTTACAGTATATTAAACAATATATAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06730 all species →	FAM92	FAM92 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009602 all species →	Family	CBY1-interacting BAR domain-containing protein/FAM92	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21223 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23868	FAM92; protein FAM92	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.