Gene detail

Detailed information of XP_058944612.2 in Pocillopora verrucosa

Genomic Location: chr4:1659832...1669592
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059088629.2

TGTCAAACAAAAATGGCGGAAGACGTAAACAACGAATCTCCTCCATCGAAAGCGGATGAACGAAAAATCGTGGTGGAATTTTGCCAGCTGCAGGAAAAATCCCGACAGCTTTTTAACGCGCTAAGAGACTTGCCCCAGTTTGGACACAAGCACTGGCAAACACATTTTGGCAGAACATTTGATGTCTACACAAGGCTGTGGAAATTTCAGCAAAACCACAGaTCTATTCTGGATATTCGGTATAACCTTAAAAGATGGCAGATAGGAGAAATTGCATCAAAAATTGGACAACTCTATTATCACTATTATCTTAGGACAAGTGAAGCAAACTACCTTCATGAGTCATTTGGGTTTTATTCTGCCATTCGATCCAGGGCATACTACAGTCAGGCAAGCAAGGAAGATAAGCCTGATTTGATGGTGAAAAAACTCCGTTACTATGCACGCTTTATAGTCGTCAGTCTTCTCCTCAACAAGGTGGATCTTGTGAAAGAATTGATACAGGAGCTTTATCATTACGTCGAGGAATATGTTAATGTGTATGAAGCGGACGACGATGAAGAATGGAGGTTGGTGATCAGTGAAGTGACAGCCTTTATGGAGGCAGATTCGTTGGTAACGGTCATGACTCCGGATGTTGTGCCGGTCACTCTATCACATAGAATGGGAGAAAACGAGATTCCTCCTCAGAGACCGGTCAGTGGCACATCGTTATCTTTACAAGAAATTATTATTGTGGGAAACTGTGAAAAGCAGGTAAAATTCAGCGAGTTAACTTTGGACATGTTTCGTATGCTGCAAGTTCTGGAGCGAGAGCCTGAGGATGCACCTTCGCGTACTTTGGTGACTTCTACCGAGGTGTCTGAGGGTCAAGATAATCAAGAAGTCAATGGTGTGGAGCGATCGTCTTCCAAGCGACCAAATCCTCATAAATATCTCCTGTATAAACCGACACTGACTCAGTTGTATGTGTTTCTGGCCTGTGGTATTAAGGAACTTCCAAACAATGGCGTCATGTTGGTTTATGTGTCCGGTGATGGTTACTTTGGAAACGCGAAAGCTGGAGAAGAAGGTCCCTACGAACAGGGAGGTGTCGCTATGAGccacaaaaaaatatcaaacgaGGAAGCAGCGAGACGAACGAGAACAAACCTGAAGGATGTTCATTGCTTGTACCCAGAAGACCTTGTGCCCTTTAGTAGGAAGCCTCTTGTGGTAATAGTAGACAGCTCAAACAGTCATGCTTTCAGGTATTTTCCAAGTTTATTTGGACAACCGCTGGTCTGTTTGATGTCACCAATTACTGTTCCTACTACAATGCAAGAACAAAGTCGGAAGGGGAGTCTCTTCACTCTGTTCCTCTTCAATCCGCTGGTTGCCTTCTGCTATGTGAGCAGCATTGCCGATCTTCGCAGTGACTTGTGGGATAGCTGTCAGCGGCAAGTTCGACGAATAATGAACGACATCCTTCGAGTATTTTACGATTGGTCTCGATATGTCGATGTTGTGTTTATTCAATTCCTTGACGACGAATTTCTTCGGCTGATGATTCTCcgttatattttctgtttctacaCAATGCATCTTCATCGAGCATTTAAGGGTTCAGACTTCTACCCAAAAAGTTTTCCAAGATTACCTGCAAAGGAAATTCTTCTCAACGGCAGCATAGAGAAACAAGTTCTTGAGCTGGCCTCCATGTTGGATGTACGGAGTCTTTTCTACGAGATTGGAGAAGGTCCTCCCACGGATTAAACGTTTTCCATCTACTAGCGTCTCTTACGATGATTCCACGCTGGCGTGACATTGAGGTAGGCGTGACAGGCAGGAGCGACAACATTTGTGAACAGACTGTGTGATACGAGCATTCAGGCTGTGAACTTCTGTTCAAAGGATAATGGATTTTTGATTACTCGAGGAAAGGAGTTACTTGAATGATTAAACACACCGATCACTGGCAGATGAACCACATACGTGTTAAAACTGTTCAAAAGATTGAACACGATTAGTCTTTGCTGATATGAATACTGGATATCAAACAGAAGATCTACTGGAGACTGAAGAATCAGCTACTTTTGGTCTCCCGTACTGCAAAGATGTTTGTATCGGTGTTAAAGACATTCTCATCaccagtggaaaaaaaatatagatgTACATAAAAATCCATTAGTCTGTATAACGTTTGCACTTGTggataaagttttatttttgta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12070 all species →	SCAI	Protein SCAI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022709 all species →	Family	Protein SCAI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21243 all species →	PROTEIN SCAI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058944612.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.