Gene detail

Detailed information of XP_058945136.2 in Pocillopora verrucosa

Genomic Location: chr4:20138182...20149776
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131773165

ATGTCGGACGAAGACCTAAGAGATACAAACACAGGCAAGAAGAAAGGACTCTTCTCCAGCCTCAAGCGTTCGAAGTCTAAAGGAGGACGTGGTAGGAAAAACGCCAAATCGAGATCCATGCCGCAACTACCTCAGTCTTACGTTGATATGAAGTGTCAGATAAATGGCACTGCTACTAAAACTAATGATCCATTTAATATTTCTCAATCAGCTAAAGGTGCCGAAGAAGACGGGGCTGCACCCCTGCCTTCACCAACGGAGGCTGGAGGTTTAACGGAATGTCCCGCTCAGGATGTTACCCCGGGCGCTTTGGCTGGTGATGTAGCCAGAGCGGGGAAATGTTCATTCTTTGCTCTTGAAGTAGAGCTTAAGGATGGAAAAGACTTGGCAGCCCGGGACAAAACAGATTCTTTTAGTGTGGAATTTCTTCATGAAAAGCCAGTTACTAAACCTATCACCAGGGCACCAGGCACCAGTGATCCTTATGTTAAATTTAAAACTGATGGGAAACAAATCTACAAAAGTAAAACTGTGCAGAAAAACTTGAACCCTCAGTGGAATGAAAAATTCTGTGTACCAATTGAAGACATCACTGTTCCACTCATCTTGAAAGTACTTGACTTTGATCGAGTTGGAAATGATGATCCAATGGGACGAGCTGTAGTGGACTTGTCAGCAATTGAAATTGAAAAACCCACAGAGATGATCCTTGAACTTGAAGATCCAGATGGAGGAAAAGAAAAGCTGGGTCAGATATGTGTTGTTATCACTGTCCAACCTAAGAACTTTGAGGACAGGCAAGAGGTTTCCCGGAAAGCAGCTGCAGCAAAGAAAGGTCAAGCTGCTAAAGAACCAGGCAAAGCACAATTGTGGGATGGTATTGTTTCCATCATACTTGTTGAAGGAAAAAAGATGATTCCCATGGATGATTCAGGACTCAGTGACCCATACTGCCGTTTCCGTCTTGGGAATGAGAAATACAAAACCAAAGCTTGTAAAGAAACCTTGAATCCACAATGGAAAGAGCAATTTGATTTAAAAATGTTTCCTGACTCTCCCATGATGTTGGAAGTTACAGTCTGGGACAGAGACATAAGGAAAGATGAATTCATGGGCAGGTGCCAAATTGATTTGTCAACCCTGGAGCGTGAAAAGTCACACAAGATTGAGGCAGCACTTGAAGATAATGCTGGAATTATAGTTATGCATCTGTCAATAACAGGACTTGATGCTCCAGGTTGTGAATCAGATTTGACTGCACACACAGAAAAGCCAGGAAGAAGAGGAGAGATTGTCAAGCAATTTCATTTAAAGAACACACCAAAGAAGATCAAAGAAATTGGATGGCTGCAGGTAAAACTTCACCGAGCTGTTGGATTGGCATCGGCAGACATTGGCGGCACTAGTGATCCATTTGCAGTGATTGAGCTGAACAACCAGAGGCTTGTTACACCAACATTGTATAAGACTCTGAATCCTGCTTGGGAGAAAATTTATGAAATGACAGTGTTCGATATACACGATGTTCTTGACATTACTGTGTTTGACGAAGACAAGAGAGGTGCTCCTGAGTTTCTCGGTCGAGTAGTTATTCCATTACTTCAGGTCACACCTGGTGAGAAGCGTTTGTACCAATTGAAGAACAAGAGTCTGGAGGGAAGAGCCAAAGGGCACCTTATCCTGACACTTGATGTGGAGTATAACCCTATAAGGGCCGCTGTAAGGACCGTCAATCCAAGGGAGCCTAAGGTCATGTTTGAACCAGCCAAGTTCAAGAGGGCGTTATTGCAGCGCAACATTGACCGGGTAAATAAGCTGGTTGCAAGTCTGGTTTCAACTGGAGCATTCGTTCAATCACTGTTCACGTGGCAGTACAAGTTTAGAAGTGCTTTTGCTTTTGCAATCTACATCATGTTGTGCTTGAACTTTGACTTCTATATTATACCGCTGACTCTTCTACTTACGTTTCTGAAGCAATACGTCATGTGTATGTTACTTGCTGAGAAGAACGTAAATCCAGAAGAACAGGAAGGTGCTCCGGTGGACGAGGAAGAAGACGACGAGGAAGAAGAGGAAGAAAAAGGAAAGAAAGGGGATAAGGGTAAAAGTTTCAAGGAGAAGATTGCAGCACTCACATCCATCTGTCAAACTGTGCAGAATGCGTTAGATATGGTGGCCTCCAATGGAGAACGAGTGAAGAACACGTTTAACTGGACTGTGCCGTTTTGTTCGTACTTGATGTGCATTATCTTCACACTGGGAACCATCGTACTTTATCTTGTACCTCTCAAGTTCTTGCTTCTCGCCTGGGGAATAAACAAGTTCACAAAGAAGATCCGCAAACCAAACGCCGTTGATAACAATGAACTTGCGGACTTTTTGTCCCGTATTCCTTCGGATATAGAGATTAAAGAGCAAAAGGTACTGAAGACAGACCCGTCTCTCAGGTTAAAGAGGATCGATGGTTAG

Transcript

rna-XM_059089153.2

GCGCGGACGCCCTGTTATTGCGCAGATTATTTTGCGCATGCTGTAGTCGTATTGAGTTAGCGCGAAGCAAAGATGTCGGACGAAGACCTAAGAGATACAAACACAGGCAAGAAGAAAGGACTCTTCTCCAGCCTCAAGCGTTCGAAGTCTAAAGGAGGACGTGGTAGGAAAAACGCCAAATCGAGATCCATGCCGCAACTACCTCAGTCTTACGTTGATATGAAGTGTCAGATAAATGGCACTGCTACTAAAACTAATGATCCATTTAATATTTCTCAATCAGCTAAAGGTGCCGAAGAAGACGGGGCTGCACCCCTGCCTTCACCAACGGAGGCTGGAGGTTTAACGGAATGTCCCGCTCAGGATGTTACCCCGGGCGCTTTGGCTGGTGATGTAGCCAGAGCGGGGAAATGTTCATTCTTTGCTCTTGAAGTAGAGCTTAAGGATGGAAAAGACTTGGCAGCCCGGGACAAAACAGATTCTTTTAGTGTGGaatttcttcatgaaaagcCAGTTACTAAACCTATCACCAGGGCACCAGGCACCAGTGATCCTTAtgttaaatttaaaactgaTGGGAAACAAATCTACAAAAGTAAAACTGTGCAGAAAAACTTGAACCCTCAGTGGAATGAAAAATTCTGTGTACCAATTGAAGACATCACTGTTCCACTCATCTTGAAAGTACTTGACTTTGATCGAGTTGGAAATGATGATCCAATGGGACGAGCTGTAGTGGACTTGTCAGcaattgaaattgaaaaACCCACAGAGATGATCCTTGAACTTGAAGATCCAGATGGAGGAAAAGAAAAGCTGGGTCAGATATGTGTTGTTATCACTGTCCAACCTAAGAACTTTGAGGACAGGCAAGAGGTTTCCCGGAAAGCAGCTGCAGCAAAGAAAGGTCAAGCTGCTAAAGAACCAGGCAAAGCACAATTGTGGGATGGTATTGTTTCCATCATACTtgttgaaggaaaaaagatgATTCCCATGGATGATTCAGGACTCAGTGACCCATACTGCCGTTTCCGTCTTGGGAATGAGAAATACAAAACCAAAGCTTGTAAAGAAACCTTGAATCCACAATGGAAAGAgcaatttgatttaaaaatgtttcctgaCTCTCCCATGATGTTGGAAGTTACAGTCTGGGACAGAGACATAAGGAAAGATGAATTCATGGGCAGGTGCCAAATTGATTTGTCAACCCTGGAGCGTGAAAAGTCACACAAGATTGAGGCAGCACTTGAAGATAATGCTGGAATTATAGTTATGCATCTGTCAATAACAGGACTTGATGCTCCAGGTTGTGAATCAGATTTGACTGCACACACAGAAAAGCCAGGAAGAAGAGGAGAGATTGTCAAGCAATTTCATTTAAAGAACACACCAAAGAAGATCAAAGAAATTGGATGGCTGCAGGTAAAACTTCACCGAGCTGTTGGATTGGCATCGGCAGACATTGGCGGCACTAGTGATCCATTTGCAGTGATTGAGCTGAACAACCAGAGGCTTGTTACACCAACATTGTATAAGACTCTGAATCCTGCTTGGGagaaaatttatgaaatGACAGTGTTCGATATACACGATGTTCTTGACATTACTGTGTTTGACGAAGACAAGAGAGGTGCTCCTGAGTTTCTCGGTCGAGTAGTTATTCCATTACTTCAGGTCACACCTGGTGAGAAGCGTTTGTACCAATTGAAGAACAAGAGTCTGGAGGGAAGAGCCAAAGGGCACCTTATCCTGACACTTGATGTGGAGTATAACCCTATAAGGGCCGCTGTAAGGACCGTCAATCCAAGGGAGCCTAAGGTCATGTTTGAACCAGCCAAGTTCAAGAGGGCGttaTTGCAGCGCAACATTGACCGGGTAAATAAGCTGGTTGCAAGTCTGGTTTCAACTGGAGCATTCGTTCAATCACTGTTCACGTGGCAGTACAAGTTTAGAAgtgcttttgcttttgcaATCTACATCATGTTGTGCTTGAACTTTGACTTCTATATTATACCGCTGACTCTTCTACTTACGTTTCTGAAGCAATACGTCATGTGTATGTTACTTGCTGAGAAGAACGTAAATCCAGAAGAACAGGAAGGTGCTCCGGTGGACGAGGAAGAAGACGacgaggaagaagaggaagaaaaaggaaagaaagggGATAAGGGTAAAAGTTTCAAGGAGAAGATTGCAGCACTCACATCCATCTGTCAAACTGTGCAGAATGCGTTAGATATGGTGGCCTCCAATGGAGAACGAGTGAAGAACACGTTTAACTGGACTGTGCCGTTTTGTTCGTACTTGATGTGCATTATCTTCACACTGGGAACCATCGTACTTTATCTTGTACCTCTCAAGTTCTTGCTTCTCGCCTGGGGAATAAACAAGTTCACAAAGAAGATCCGCAAACCAAACGCCGTTGATAACAATGAACTTGCGGACTTTTTGTCCCGTATTCCTTCGGATATAGAGATTAAAGAGCAAAAGGTACTGAAGACAGACCCGTCTCTCAGGTTAAAGAGGATCGATGGTTAGCGCACACAGTGATACAGCATGTATCTTGCAATGAACTCGATCAGTTGTTCGACTGCTCTCGAGTGTGGTCCCTGTGCTACGAGTTGAAACTTTTGGGTTAATCTACATCGTCGTGGAGATGAGAATTTACAAGTGCTTTGAACATTTTCAGTAAAGAATTTTGCGAATTTAGCTCTATTTATTAAATTGTACAGTATTTATTACTTctagagaaaagagaaaattaattggAGAGCGAAAAGTAAGTTAAATGGCGGCTCCACAGTCACTGAATTATATTGGTCAGGCAGATAAGTAGTGTGCTgcctttaaaatatttacattggGTTTGGATGTACAGACTGAAATAATTATAATGGTTAAAGGGCAAACTTTCGTTTTTTGCACTTCACAATTTTTGAATCAGTGAAAGTTCTTTTTCGTTTTGCTTTGTCAAACAACGTAGTTGGAAAAATAGAACTTGTTtgaattcatttaaatttcaagCATGAAGTGGGGTAGTCGGTGATAATAAATTGGTTTTTAGGACTCTCCAGCCAATTGCTGGTGTCGTGAGTCTCgtccttttttggtttttgtttcttttcaaatgatatAATTAGTTAGAGAACGATCTTGTTTCATTAAACTTTTTAACTTGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08372 all species →	PRT_C	Plant phosphoribosyltransferase C-terminal	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR013583 all species →	Domain	Multiple C2 domain and Transmembrane region Proteins, C-terminal	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45911 all species →	C2 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058945136.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.