Gene detail

Detailed information of XP_058945592.2 in Pocillopora verrucosa

Genomic Location: chr13:1829332...1837507
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059089609.2

CCGGTCAATCGTAAGCAGATTTTCGTATTTCTAGATGCAGTTTGAAAACTGTGCGTGAGTTTTTGTCGTAACTTTGTTTATTTCGTCTGTATTTTTATATGATTTTACTAGAATGAATAGGCTGAAGAGAAGTTTAAGTTTAAGGAGTTCTAAAAGGCACATACCGGAAAGTGTAAGGCCACAAATTTGGGAGAACGACAGCTACAAAGTACGGAATGGAGGCGTTAGTTTCCCAGTCAAGTATGTGGGATCGATCGAAGTTACCGAGTCCAGAGGAACACAAGTTTGTGCAGAAGCTTTCCGAAAGATGAAAGAAGTCGGGACAGGGAAAAAGAAGCGAATGCAGTTGCTTGTCACGGCAGATTGTGTACGAGTCGTGGACGAACAAACCAAGTCCCTTGTCATTGACCAGACGATTGAAAAAGTGTCATTTTGTACACCTGATCCGGGTAACGACAGAGTCTTCTCCTACATCTGCCGGGAAGGAACTACAAGGAGATGGATGTGCCACAGCTTTATAGCTTTGAGAGACACAGGAGAGCGTCTTAGCCATGCAGTTGGCTGTGCATTCACAGCTTGTCTTCAGAGAAAGCAGAAGGCTCAAGCTCTACAGCAGCAACACAAGGAGcaacaacaacaacagcccCCAACCCAACAGGGTACCACTGTAGCTGCTGTAACTGGGACACCAGGTGCAGCAAGCACCATACCAGTAGTTAATGGCTCCAGTCCTCCAAATCCACCTGCACAGCAGCCATCCCCTGGACAAATGCAACCTTCTGTCCCTGTCCCATCTACTGTGCCAGCATCAACCACAGCTCCAATCGCTGCTGCAACAGTCCCATCCAGTACGACAACTCCTCCAGTTAAGAATGGTACTGTGACGACAGGAACACAGCAGTTACCATCACCAGCTGAGCCAAAGCAAAACAATGCTGGTACTCCTGTACTAAAACCTCCTCCCTCAGTTGCAAGACCACGTCCACAACCTTTTCACCCTTCACCTTTTACCCGTCACATGTCACTGAGGTACCGCTCCAATCCTCTCTCTTTTATGCCACTACGCAATGACACAAGTGGCTATGAAACATTGACAGAAGAACCAGCAGTTCCACAATTGCCTCCGACTGTTGATGCCCTTATGCTACAGAAAAATACGCCCACTCCAATTTCAACATCATTTGGAACACCAGTCTCTCAAGGTCCTGCAACACAGAACAGTGCTCCAAGTCAACCGCCTTCTATGTTTAATGGGCTGAATACAAACTCAACATCAACAATACAATCATCCAATGCTATACCGAACTTAAGTCAAAGGAGTAATGTCCCCAATGCAGTGACCCCATTACAGCCATATCCTATTCAGGGGGCAACCCCCCAAGTCAATGGGTCAGGCTCATGGAATGTCTCAAACCAAGTACAGAGGCAGAAACCTCTATCAGAGGCTGAAATGTGGCTAGCATCTGCTTCAGTTGATACCGCACAGCCAGCCAAGACAGTGCAACCAAATCAGGGTTTGCTGACTACTGTAAATCCATTTGCAGAAACGTCATCCCAAATTGATGCTCTCTCAAATGCATGGACACATGATCTGCAGTCCACACTGCCTAGTGTGTCATCACAAGGGACAACTGGCTGGTCGTCATCATCTCAGTGGGGAACCAGCACCACACGTCAAACAAATGGAGAAGATGACTTTGCATCATTCTTTGCTTCAAGGCAAACCAGCCCCCCTCCACATGCACCCCTCAGTAAGAAAGATTCCAACCCATTCACACCAACTCAAGATCAAGTATTCTGGGTGTGATGAGGAAATTCATGGACAAGGTGACATTTTTAGTTCTTAGCATCAAGTGTTCTTAGCAGGAATTTGTACACAACTTTTTAACATGGATAATGATTGTTTGAACTTTTCAtctctgagaaaaaagaaaccaagcCAAGCCAAGCCAAAGTGACTGAAGTTAGTGATGGTGACTGGGATTTGTGAAACTGAGCAAAAATTACCGTAAGAGTCAAGTGACTGTCAAATCAGTTTTGAAATTGTCCATCACTGTCAAGTCTTATTCAGAACCACCTTCACGCAAGTGCAATCATGCCATCCAATCATTGGAGGTTTGAATCACCTTTTGAGCAGcaatggtggatatttacttaagaaaattttaactgcattttcttttaatgaGATTTTTACATGTACCATGTAGTAGTTGCTGATTTGAGAATTTAGAAGAATGGTGTGGGAAATCAAGAGGTTCTGTAACACTCAACATAACAAGAATGTGAAAATTTAGAAGGCTCAAGAACTTCTGTGGAAGATAAcacattcttatttttttaaagtagtGTTATTcgttttcaaaaggaatttgGGCAAGCTGGAAATGCATGAATGATGTACGCCTAGTATCTAATATAATTATTGTTGATAGCTCATAGTGCTTTAACTTCTGTAAGTATTATGTTCCAAAATGTATAGAAACCTTTTCACATTACACACTtgggatttttttatttcttgcatttCACACATGTATATCTCTTAGATTTTTTGTGAAGTGGAAATGAGGTTGCAGAGGTTCTCTTTCATCATAATATGGGTATATAAAAATTGTCATACTTATAAATATGTTAATTGTACAAAATATAGGGTTGATGTTTCTGAATTTTACACAAGTGAAGGCCATGTGAAACGACTTTACAACTGCCTTTGCACTTTATAACTCTGTTGGCCAATGATATCATCTTGGGTTTTTATTGCTTGAGCATCAGCTACTGCAAAGAGACTTTGAGCTTACTTGTCAATTATGCCCCCCAAAATTggacaacttaaaaaaaaatttgtttacctACGTGCACTTTGTACCAACAGTTAGTACAATATCTTTTAACAgcaaagttttatttaaaaattagatATCCAAGCGCATTATTTTTAAGTTGAATTTATGACATGAAAATGTGGTTTGTGGCAATTACTTGAATTATGTGTGACAAGTCTGTTTGAAGTATTTCATGTATACCAGAAATTAACTTGGGCAGAATGAAGAAGCATAACCTTGTTCCATGCTTGATTAAACATCATTAGAATTGTTTAAAATGATTCTTTTCATGATTTTAGTTTGTTAGACTTGAAGAGTTTAGGATTTTAACCTATCATTTCAACTGAACAACTGTGTACAGGATTAAACAGACATTGCATTCTTACAAGTTacactttttttctcttgctgAGTATGCTGAGAAGTATGCTGTTGAAAAATAGATCTGATTACACAAGCTTGGTTGGTATTTTCACTGCTCTGTACTTTTTTTGtcaagataaatttttcctGCTTTGAATGAAGTCAAGCTAGCCTGGAAGAGGTAACCTGGATTGTGTAGATTTTGTTACAAATCACATAAACACTGCAGACACACTTgcataacaaacaaataaataaataaataaataacagaaaataagAGGACGTGTAAGCAGCTCCATTAGTACAGTCAGAATAGATGTTGGTTCCACAATGGCAAGATCTTGGCAAATGGAGCTGTTTTTCACGTAATTGCATTTATTTGGCCAGCCTAGTATAACATGCCAAGCCTCTCTTTTTTTAACGAGCCTCTGAGGTAAAAGAATTTAGTGGCATATTATGTTTATGTTGCAAAAAGTGAGGAAAATTCTTCTAAAACATTATGTAATTATTTGAAGTGCAATCACTAATAGTAGTTTTATTCtaatataattttgtaatgTTGCCTTCCCTAATGAGCATTATGTTGCACAACTGTCAAATAGGTATTTTGCAATCAGTTATGTTATAACTGATCCTTTGTACTGGAGATTTTCCACTCAAATAATAATATAGCTGGTTGATTGTGGTGTAAATTCAAAAGCGATGTTATTTTATGTTATGAAGTCATGCTGGATGTGGTGCTTCAAATCAGAAAGTGGTTAATAGTAAAATAGAGTAATCCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR016698 all species →	Family	Numb/numb-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47368 all species →	NUMB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06057	NUMBL; numb	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.