Gene detail

Detailed information of XP_058947608.2 in Pocillopora verrucosa

Genomic Location: chr5:22603221...22607875
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059091625.2

CATGCGCAGATGAGgattgaaagaggaaaaatcgCTTACTACCTGACAAGCTGATATCTGCTCTGATCTTCATCATTTAGTGCTGCAAAAATGGCTAAAATGGTGATGTTGGCTTCTCCCACAATAATTCCTGTATTGATGTCGCTGTTCTTACAGGTTAATTCATACGGTGACATCATAAAGAATCACACCAAGGGTTATTGTGTGTGGTACGATCAATGTACAACTGGGGACAAGCCGAAGAATTGCCTTTACAATGGACCGGCCAAGAATTTAACCAATCCAAAAGGTGTGCAGATATTGAACAGTTTATGCCCAGAATTGAGGGATCAACCAACATGTTGTTCAACCAAGCAACTGCAATCGTTGGATAACAATTTGAAGATGTTCATTCAACTTACCGGTCGTTGTCCCGCCTGTTGGAACAACATGAGAAGGCTGTATTGTCAGCTTACCTGCAGTCAGGATCAGTCGCTTTTCCTGGATCCAACTGTGGTGTACCCATTTACACCATCGCCTTCTATTAAACAATATATCTTGGAAgttcaatattttgtttcaccTCAATTTAAACAGGGTCTGTTCGACTCCTGCAAAGACGTCACTTTTCCTGGAAGCAGCGAGAAGGTTTTGAGTCTCCTTTGTGGTACTACCGCCGAGCTGTGCACTCCAGATAAACTCCTTCGATACATGGGAAGCCCAATCAATGGATATGCTTCATTCACTGTCGATTTTCCTGACAATCTAACTTCAAATCTTTCATGGATGAACCAAACTGTTTTTAAGTGTAACAAGCCATTTATAGATCCCCAAACAAACAGGACAGCAAGTGTTTGTAGTTGCCAAGACTGTGCTGCAAGTTGTCCAGTGCGAAAAGAACGACTGACCATCAAATCCACTCACCCTTCACCTGCAGGATATCATCGATACGCAGATGATAAGTGGATTCCATTTGGTCCAATCTTTCACTTGGAGCTGTTAAATCAGGCCTTGGAGCTTCAAACTGCGATCTCCACTATGAAGGTATTATTTGAGAACTCAACCATTACCTTAGAGGACATTTGTCAAAATTCGACAGATCACCTGCCATTTGCTCCACCAGTGACCGAACGATGTGAAATCCAAAGTGTTTTCCAATATTTCCAGAACAACAAGACGAGGTTAAATAAATGCCTCACCAGCATGGGTTGGAATTGCAGCTATGGACACAAATTCGATTTCAAATTCGCTGACTTCCATGATCACCTGTTGTTTTGCATGAGGTATCCCGCCTCGCCATTCGAAGAAATGCTTCAAGAACCGTGTATCGCAGCCTATGGAGGTGCTGTTCTTCCGGAAGATGTGTTAGCTGGCTTTCCAAGCCCGGTGTATCACAACGCAACATCTTTGGAGATTACATTTTTGGTGAAGAATTTCCTCAAAGACAGCAAAATGGCAGAAGTGATAGCCTGGGAAAAAGCTTTCCAGCTGTACATGGAGGATTATGTGAAAAATCCTTTGCATGCCAATCTCACCATTACTTACTCCACACCAGAAATGTCTAAGGACTTTTTATACGTATGACATGTGCAAGACAAATTTCCAACTGAAAAAGGTTTAATTTGTTCTATATCACTAACTGCATGCTCATGAtttgaaaacattaatttttcaaattttttggatCTTTTAACCATAACATTAAACGTAGGATCTCTCGAAAATGTGCTGCTCTGTTCAAGACAGTTATTTTGTGGGAATAAGCGAAAAAGCCAGTCTTCATCGCGCCAGACTTCCGCTGATTTTCGCTCCCTCGGTTTTTCGCTCGTGTCCGCTGAGCGGCAGCCCGGCTCAGGCTAAAAGGGGACATCTGAATGGAGGGGAACTTCAGGTTGAATTCGAGTGCAAAAGACGAGGCGAGTGAGAGCTGAATCTTATTCAGGTTTACCATATGTTAAAACAGTAAGACTGTGTAACCTTCCTTTACTATAATTAACTCCTAAGCCCATGcaaattaatacaaataaaGCTGAAATAATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16414 all species →	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032190 all species →	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058947608.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.