Gene detail

Detailed information of XP_058948647.2 in Pocillopora verrucosa

Genomic Location: chr14:8167448...8178174
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131776480

ATGAATCATTCAAACTCAACGACTGGTTACAGATCCTCAAGGCCCACGTTATGTCGTTATTACAATACAAATGGATATTGTTTCTACGGCGATCAGTGCCAGTTTGTTCATGCGAGGCCTTCTTCCAACGAAGGTCGAATGGGGCCTGCCAATAATGGACATGTTATAAATAATGGTCCAATGATGAATAACGGACCTGTTGGTCCCAAGGGGCTCAGAAGTGGAGGGTTCAAAAGCAACACAGCTGGTCTTCATGACAACTTTGTTGGCAACATGGCACAGTTGTCGATTTCAACAAACAAGATGCCTGCAGGTTCCCTTGGTGGGCACCTCTCTCCTCTTTCCCCATCAAAGAAGGCATTTACCTCATCCCTGGCACCTGGAGGTCCTGTGTCACCACTGCATTCTCCTAGCAAGCCACCACTTGGATCACCAAAGGCACACCACAATCCAATCACATCACAAGCATTTGAATTTTTACCATCTACTGCAAACCAAAATCTCCCCCAGCCACAAATACACAACCAGGCACATGTTCCAGCTCCACAGCAGATGGAATCCATTGGTGGAACAACCTACTTTTACACTCAACAAGGACAACAGCAGCCTGCTGTGCTTTTCCCATCGTACCAGGCATATGTGTCAGAGCCTTCTCACCTTGCACATCTTCAAAGCACTCAAACACGGAACAATTCTTTCTCCATGTCAACTCAAATTCGACAGGAACTCATTCACCAACATGCACTAAGTATGGCACAGCTTGACCCAGATGATAACACTGTGCCGCAGGAGGTTGACAGTTACCACACCCTGTGTCCAATAGAACCCTTGGATACCCCAACTGAGCAGGCACAAAGGACGTTTGGTTATATGACTACCTGCTACAAAGCCACAAATTCTAAAGATGGACTTATTTACATACTTAGAAGAATACATTCTTTTCGACTTGTAAATACCAAGTCCATGGCTCTTGTGGATCAGTGGAAGAAAGTCAGCCACTCAAATCTCGTCAGTCTCAGAGAAGTGTTTACAACAAAGTCTTTTGGAGATAATTCTCTCGTCTTCGTGTACGACTATCATCCTGGAGCCGAAACACTCCTTATGAGGCATTTTTCGGGTCCAGACTCCAATCTCCCCGTGAACCCCGATGGTACATTAGTATTTCCCTCACATCCTCGTGCCGGCGGAATGTTAAACAGACACCGGCCAGGTCACCGCAGTCCCATGCCTGAACGGTTGATTTGGAGTTACATTATTCAGTTGTCGTCTGCACTGAGATCTGTTCATGCATCTGGACTGGCCTGTAGAGTCATTGATCCCTCCAAGATTTTATTAATCGGAAATTCAAGATTAAGAATAAATGGTTGTGGGATATTCGATGTTCTCAGTTTTGATGCAAGTAACAGCCCGAATGCTATGATTCCACATTTCCAGCAAGAGGATCTTACTTCCCTTGGTAAACTAGTCCTTGCCTTGGCGTGTTACTCTCTTCAAGCTGTGCAACGTGAACATATTCAACAGTCGTTGGAGTACATGGCCATGAACTACTCCTCAGATCTTAAAAACCTTATTATCTATCTTCTGGGCAGTCCTATCGCAGCTCACATGAAGAGCGTGAATGACATTATGCCGATGATCGGAGCCAGATTTTACACACAATTAGACGCTGCGCAAGTCAAGTGCGATGTTTTAGAGGGCGAGCTGGCTAAGGAAATGGAGAACGGGCGCCTTTTCAGAATCCTTTGCAAGATTGGAATCATCAATGAACGACCAGAATTCACTATGGATCCAAGTTGGTCGGAGACTGGTGACCGATATCTTTTGAAGCTGTTTAGAGACTACTTGTTCCACCAAGTCACTGAAAATGGTGCACCATGGGTAGACTTGGCTCATATAGTTGCCTGTCTGAACAAGCTAGAAGCAGGGACAAACGAGAAAGTTTGCCTTATGTCACGAGACGAACAGTCTGTGTTGGTGGTTTCATATCGTGATCTGAAGCAGTGTTTCGAAGGCGCTTTCGGTGAAATAATCTCCGCTTCTCTGGCGTAA

Transcript

rna-XM_059092664.2

CCGATCAAAAATGGCGGCGGTAATCTGAAGGTCGGTTATTTACAATGTCTCAGCAGCGAATTATTATCTGAAAACGCGATCAtcgtgaagtgatgaatcatTCAAACTCAACGACTGGTTACAGATCCTCAAGGCCCACGTTATGTCGTTATTACAATACAAATGGATATTGTTTCTACGGCGATCAGTGCCAGTTTGTTCATGCGAGGCCTTCTTCCAACGAAGGTCGAATGGGGCCTGCCAATAATGGACATGTTATAAATAATGGTCCAATGATGAATAACGGACCTGTTGGTCCCAAGGGGCTCAGAAGTGGAGGGTTCAAAAGCAACACAGCTGGTCTTCATGACAACTTTGTTGGCAACATGGCACAGTTGTCGATTTCAACAAACAAGATGCCTGCAGGTTCCCTTGGTGGGCACCTCTCTCCTCTTTCCCCATCAAAGAAGGCATTTACCTCATCCCTGGCACCTGGAGGTCCTGTGTCACCACTGCATTCTCCTAGCAAGCCACCACTTGGATCACCAAAGGCACACCACAATCCAATCACATCACAAGCATTTGAATTTTTACCATCTACTGCAAACCAAAATCTCCCCCAGCCACAAATACACAACCAGGCACATGTTCCAGCTCCACAGCAGATGGAATCCATTGGTGGAACAACCTACTTTTACACTCAACAAGGACAACAGCAGCCTGCTGTGCTTTTCCCATCGTACCAGGCATATGTGTCAGAGCCTTCTCACCTTGCACATCTTCAAAGCACTCAAACACGGAACAATTCTTTCTCCATGTCAACTCAAATTCGACAGGAACTCATTCACCAACATGCACTAAGTATGGCACAGCTTGACCCAGATGATAACACTGTGCCGCAGGAGGTTGACAGTTACCACACCCTGTGTCCAATAGAACCCTTGGATACCCCAACTGAGCAGGCACAAAGGACGTTTGGTTATATGACTACCTGCTACAAAGCCACAAATTCTAAAGATGGACTTATTTACATACTTAGAAGAATACATTCTTTTCGACTTGTAAATACCAAGTCCATGGCTCTTGTGGATCAGTGGAAGAAAGTCAGCCACTCAAATCTCGTCAGTCTCAGAGAAGTGTTTACAACAAAGTCTTTTGGAGATAATTCTCTCGTCTTCGTGTACGACTATCATCCTGGAGCCGAAACACTCCTTATGAGGCATTTTTCGGGTCCAGACTCCAATCTCCCCGTGAACCCCGATGGTACATTAGTATTTCCCTCACATCCTCGTGCCGGCGGAATGTTAAACAGACACCGGCCAGGTCACCGCAGTCCCATGCCTGAACGGTTGATTTGGAGTTACATTATTCAGTTGTCGTCTGCACTGAGATCTGTTCATGCATCTGGACTGGCCTGTAGAGTCATTGATCCCTCCAAGATTTTATTAATCGGAAATTCAAGATTAAGAATAAATGGTTGTGGGATATTCGATGTTCTCAGTTTTGATGCAAGTAACAGCCCGAATGCTATGATTCCACATTTCCAGCAAGAGGATCTTACTTCCCTTGGTAAACTAGTCCTTGCCTTGGCGTGTTACTCTCTTCAAGCTGTGCAACGTGAACATATTCAACAGTCGTTGGAGTACATGGCCATGAACTACTCCTCAGATCTTAAAAACCTTATTATCTATCTTCTGGGCAGTCCTATCGCAGCTCACATGAAGAGCGTGAATGACATTATGCCGATGATCGGAGCCAGATTTTACACACAATTAGACGCTGCGCAAGTCAAGTGCGATGTTTTAGAGGGCGAGCTGGCTAAggAAATGGAGAACGGGCGCCTTTTCAGAATCCTTTGCAAGATTGGAATCATCAATGAACGACCAGAATTCACTATGGATCCAAGTTGGTCGGAGACTGGTGACCGATATCTTTTGAAGCTGTTTAGAGACTACTTGTTCCACCAAGTCACTGAAAATGGTGCACCATGGGTAGACTTGGCTCATATAGTTGCCTGTCTGAACAAGctAGAAGCAGGGACAAACGAGAAAGTTTGCCTTATGTCACGAGACGAACAGTCTGTGTTGGTGGTTTCATATCGTGATCTGAAGCAGTGTTTCGAAGGCGCTTTCGGTGAAATAATCTCCGCTTCTCTGGCGTAAACACACCCCTAATTTAATCACAGAAACAAAGTGGTAGGTttcttaatggaaaaaaaaagcagttaacaacaaaaaaagctcGCGTGGTACTCGTAAAGGATTTGGAGTGAAAGGTACGCGTGCGTGGATTGTGGGTGAGTTGCCCGCGGACAAATCATCCATGTTCACTACTTGGGTTATTTTTATCACAGCAACAATAGatattttcttgatattctcttgatatttTAAAAGGTTCTTAATAAGAAGATAGGTCACCGACGATTCTCACTCGCCTTTTGTGTATCGGTTCTTTATACAGTTGAAACTAATTTTGTGCGACATCACTTTTCTTGAGGAGAAATCTAAGAAGGACAACGTAAAAATTCGTTTCCTACGCAGATTCAACCACGAATACAGAAGTGTTATTTTACGTTTCAAGATCATTTCGGATCTGAAAGCTGTCTTAGATCACACGCGTCGATTACAGGTAGCACCTAGAACCAAACGTGGATTAACTGACTAAATTATCTTGGTTTTGACTTGTTAATTATTGTTTGCACTACGACGGATTAAGCAAATTTGCCAATCAAACGCGCCTCGACAACCGCTGTAACAGAATGGTGCTCCTTCTTTGAACGATGGGTTGAAGTAAAAGCACAAGAATTCACAGATTTATTCTTGTAAAAGTTCCTACTTTTTCACATGATAATGATTTAGTTTTGTGCAAACTTTTTATGCAATTTGAGTGCAGCGACTGGGCAGATGTCTGTTGGGTGGCCTCGAAGTAAAATTTTAGAACTGCGCCAGACGTCTTCATCTAAACCACGATTCTGTAATTCAATGGTCCATCTGATTGGccagaaaaaatattgaatagGCCCTCATTGGCTAGTTATTGGCTAGACAAATAGCTTGAAAACATCGAGAAACTGCTAGTTTGTGCCAGGCTCGAGGACAGGGGGGACCAGGGAAAAAACGTGTTAGGGGGAGAGGCGAGAGTTTTTCCTCCTTTAGGTTTCCCCTCTACCGCCACTTTTCGCCATTTTCGATCTTATTATTTGATCTTTACATCTGACCGAGAATCTGCCAAAGACCAGAAAAATACTAGATCGttgctcattaaaaaaaaaacaaacaacaaaaacaaaaaaaaaacacgcaaaTGAGGAATCTGAGAATGGTGGAGTGGAAGCTTACACGTTCATTTAGCAGCTGTAACAAATGTGGCCTGAAGTTCAAAGGGGTTCCTGTACTGCCACTATTGAATATTTCCTTCCTTGTGTTTGGTTACTTTTCGCTTGGATTAACTTAAAAAACTTTAACTCTACTCTAACGTTGTAAAATTAACTTGTAAATATCTCGTTTGGAGGTCAGGGAAAATCTGAAAGCTGTAATTACCTCTTTATTGGTATCTCGTTTATACCTTTATGTGTTTAAGTAAAGTAAAACAATATACATACTGTATAAAATTCTATCACTCGTGTAGATACTGTGCAATTGTACAGCAGCGTTTTGCATACTGTAAAcgtatttttcaatatttatagTTAAAGGAAGATTAGCTACggtttttaatgaattattttcaaaatcaaatatttagatcctttttttaaaggacctttaaaaagaaattcgaTATTTATGATGTCGAGTTTGCACAAGAGTGACATACCTTCTACGAGAATTCTAGATGCAAGTCAAAGTAAGATTTATTTGagatattattattaaaatgaaaagtctTCAATAAAGAATTGTTTGAACGTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18101 all species →	Pan3_PK	Pan3 Pseudokinase domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR030844 all species →	Family	PAN2-PAN3 deadenylation complex subunit PAN3	Interproscan
IPR041332 all species →	Domain	Pan3 pseudokinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12272 all species →	DEADENYLATION COMPLEX SUBUNIT PAN3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0008143 all species →	Molecular Function	poly(A) binding	Interproscan
GO:0031251 all species →	Cellular Component	PAN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12572	PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.