Gene detail

Detailed information of XP_058950331.2 in Pocillopora verrucosa

Genomic Location: chr12:123051...127504
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059094348.2

ACTGGGAAAGATGTTGAAGAATACTGGAAAATTAGCTGGTAAAACATTATTTATCACCGGCGCGAGCCGTGGCATTGGAAAAGCCCTTGCGCTGAAGGCAGCTCAAGATGGAGCAAACATTGTTATCGCCGCTAAAACCACCGAACCTCATCCGAAACTACCTGGAACGATATACACTGCAGCAAAAGAAGTTGAAGAGACAGGAGGAAAGTGCCTTCCCTGTGCAGTAGATATTCGTGATGAAAACGCCGTTAACAGTGCAGTACAAGAGGCTGTAAAGACATTTGGTGGTATTGACATACTTGTTAACAATGCTAGTGCAATAAGCTTGACAGGGACTTTGGAAACACCAATGAAAAAATATGATCTGATGAATAATGTCAATGTAAGAGGGACATTCTTGTGTTCTAAAGCATGCATTTCATATTTAAAGAATGCAGAGAATCCTCACATTTTAAACGTGACACCACCTTTAAATATCAGACATGCCTGGTTCAAAGAACATGTTGCATATTCATTATCTAAGTATGGAATGTCATTATGTGTCCTTGGGATGTCTCAAGAATTCAAGGATGATGGGATTGCAGTAAATGCACTGTGGCCTAAAAAAGGTATTGCCACTGTTGCTGTCATGGTTACTGCAGGGAAACAAGGCTTAGCCTACTGTCGAATAGACAAGTTTTTTGCTGATGCTGCATATATCATGTTGACAAGAGACAGTAAAACAAGGACAGGAGAGTTTCTTTATGATGAAGATGTTCTTAAGGAGGCAGGAATCACTGACTTTGAACAGTATTCTTATATTCCAGCTGGTGCACCAGTGCCAGACAGTTTTATTGATGGTTATTCCCCCACACTGCAAAGAAACTCCTCCAAGGATACCAGGGAAACTTCCTCTCACAGGAGTAAAGTGAGAGGGGTAGTAGACATTTTTGAtgctgttaaaaattttttggatgaaaagCTTGTTCAGAAAGTGAATGCAGTCTTTGAGTTTCATTTAACAGGAAAGGAAGCTGGAGTGTGGTATCTTGATCTTAAGAGCAGTACAGGTGAGGTTGGAAGAGGTTCTTTTTCAGGAGATGAGGTGAACAGTACAGTAATGTTAGACTCAGAGGATTTTGTGAAGTTGTTCACTGGCGAACTTAATCCAGCACAAGCGTATTTGGGAGGAAAACTCCAGCTTACAGGAAGCATGCATAAATTTATGAAACTTGAGAATCAGCTCCTACAAAAGATGAAATCCAAATTATGAACATTACTCTTTTTGAGAAGAATTTAGTCttgttcaaagtaaaaataatgacaataataggAATTATATTGATTGTTATCATCaccactattattattattatttggtGTTAGTATTGGTATCATCATTACTGTTAAATTGTGTTTATAGAATTAAGGACTTTTTTCTAAAGATGAAGAGGAacatatttaaatattttcttgagGAGTAACTCATAGTTAATAAGCTGCATTAAGGAGAGAGGAAAGTAATgaatgaaagcaatctttgcagtgATGAACACTATTGAATGAACTACGACCTGCACAggccttgaatttttttcatgccCTATTTTCACCACCACTTAAGTAGTATTtattactgcaaagattgctttcattcatttcttcattaaaCCATAGTTCACACGTATTAGTTTCCTATATATTCACAGAGGAAAGTAAGTAAGGAAGGAATTGTCACATTACCAATCACCAAAGTTTCTGGCAGAAATCTTTATCTAAAAGTTTCATATAAGGGTACAGGGTGTTTTCATCTAAGGTTACCCCAAACTGTATATTTGAAATCCTGAACAAAGTAAATACATTTTAATCAAGTACATCTAAAGATACTGGGTAATTTTGTCTACAGTAAAGTAGATATGTAGGTAAAAATGTAATGGTTATGACACAGTTACATTGCTGTTGTTTGTGTTACTCATTCATTCTTCCATTGTTTGGATCAAAGTGTACATATTCAGAGTTCTTTTTACCAGATGTCATGTTGCTTTTGTCAGTATTTGTAATATTGTCCTGTGGTATTACCTTCAATACTTGATCAAATAAACAGACATAAATTGTGTAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR051935 all species →	Family	Hydroxysteroid dehydrogenase-like protein 2	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42808 all species →	HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058950331.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.