Gene detail

Detailed information of XP_058950382.2 in Pocillopora verrucosa

Genomic Location: chr12:375042...385937
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059094399.2

CATGGCGGAATTACATTGTATCAGCAGTTTCCCCTAAACAACACTTTAACCTTTCATATGGAAGGTTATTGAcgaaagaataaagaaatgtttCACAAGCCTTTTCGAGTAAAATCCAATACTGCGATTCGCGGGTCCGATCGGCGAAAACTGAGATCAGATGTTAGCAATGCTTTTCCCAATTTATCACAAGACAAAATCACTGAAATTATTCCAAACAAAGAGGAAATTTCAGTGATGCGTCTTATGACACATTCTGGACAGAATGTTACAGTTTTTTGTCTCAGTGGGGAACCAATATTCTTTGaagttgaaaagaaagttttccCAACAGTTTATACTCTGTGGAAATTTCCTGACCTGCTTCTTAGCTTCAAAACATGGCCCCCTGTTTTTGAAAAACTCCAGGGTGGAGCAGACCTAATGCTTCCTGGTGTCATTCTGCCCTCTGAGGGACTCTCAGCTGTGGGAAGATTTGAGAGAGGTACACTTTGCAGTGTTTGTCTCAAGGGTAACAGAGCTTCTGTGGCCATTGGAACAACATTGGTGTCCAGTAAGGACTTGTTAGAGGATGGATTGAGAGGAAAAGGGGTGAAGATTGAACACGTCTACCTTGACCTGTTATGGGCACATGGCAGTAAAACTCAGTTACCGCAGCTGGAGGAGATAAATGATGAGGCTGAAATTGCTGATGTTAATGATCGTATGGAAGAATTGTCACTCGATGAAACTAAGGACATTAATCAAAAGGAAGTTGAAGAGACTGAAAGCTCAGACGGCTTTGCTCAGAAAGATGatgaaaaggaagatgaaatTTCAGTTGAGGAAAGCAATGGAACAGACCCAGTGTCAACAAGTGCTACAAATGCAGACAGTAATGAAGTTGAACAAGAATTCCTAGAgtctgaaaatgaaacaaatttacaagacAAACTTTTAGaGAATATGGATGATCTTTTAGAGTACTGTTTCTTTTGCGCCTTGTTGAGAATGAAGAAAGTCGAGCTTCCTGTGTTGACCAGTACATTTTTCAGGAGTTATCTTTTACCTTCCCGCCCGGAGGGAAAGTCATTGGATATCAAGAAATCCTCCTACAAAAAaTTGTCAAAATTCCTTCAATGCATGCAAGAGAGAGGTTTGATATCAGTACAGGAGGCGTCCAAAGGAGTCGATCATATCACCAGTATAACTTGGGACAATCCAGAGCTGAAGGATTTTAAAGTAAACGCGCCAGTTTTTGAAAGCGTCAACGAAAAAGTGAGCTCTACTTCTTCTTGCAGCACAGAGCCTCCATGTATCGAAGAGCTGTTTTCCGTATCTGCAGCATTGTTACCGATATTTTCCGAATTTGGATTCAGgaaaaatgatgttttaaatCATGCTGGTGTCCGGACGACCATGACGAATTACGTGAAAGCTCACAACCTTATGTCAAATGAGGACAAAAGagtgGTTGTACTAGATCCCAGCCTGACTAAAATCCTCCTGAACAAAAACGAGAATATTGAAGTTCTTCCATGGGATCGGCTCTTCGAAAGAGTGTCGTCGAAAATGAATAACTGTCATCGAATAACACTTCCAGGCCAGGAGTCAATAGTCAGGAAAGGGAAAATCGAATCTATCGAAATTAAAGTGGAACAAAGAATGGGCAACAAAAAGgttACATTGATCCGTAATCTTGAATCCTACGGGATTGATCCGCAAGAATTTGCTCACAATGTGCAAATTAAGGCTGCATCTAGTACTTCAGTTTCTCAGCTTCCGGGGAAACATACTACGCCTGGATTGCAGGTTTTAGTGCAAGGAAACCAAGTGGACATCGTGGCGAAATTTCTACTAGATGAATACAAGATTCCTAAGAAGTACATCAATGGACTTGACTTACTCAAAAGcggcaagaaaaagaaaaaataaatctgataataatattattttaattattatgaCATAAAATAAATGAGCCTTTTACACGGTGCTTTCCTCTGGTTTCGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01253 all species →	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF17832 all species →	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR001950 all species →	Domain	SUI1 domain	Interproscan
IPR036877 all species →	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR048248 all species →	Domain	Eukaryotic translation initiation factor 2D-like, PUA RNA-binding domain	Interproscan
IPR039759 all species →	Domain	Eukaryotic translation initiation factor 2D, SUI1 domain	Interproscan
IPR041366 all species →	Domain	Pre-PUA domain	Interproscan
IPR039757 all species →	Family	Eukaryotic translation initiation factor 2D	Interproscan
IPR004521 all species →	Domain	Uncharacterised domain CHP00451	Interproscan
IPR036885 all species →	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR003121 all species →	Domain	SWIB/MDM2 domain	Interproscan
IPR048247 all species →	Domain	Eukaryotic translation initiation factor 2D, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12217 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15027	EIF2D; translation initiation factor 2D	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.