Gene detail

Detailed information of XP_058951219.2 in Pocillopora verrucosa

Genomic Location: chr4:23149261...23172842
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059095236.2

CAGACAAGAGTGACAAAAAAATCTTGGAAAAGGTACCTTGAAATAGAAACTATACATTTGCGTAAAAATCGCTGTCAGTTATATAATTTTGATAATTCAACGCTTAGACGACTCGGGTTCTCGTTTTCTTTGGTTGTGCTCTTCTACTGTCCTGTGAGTCCATAAAACGGATTTTGTCCTCTCTTCGAAAACGGAACATCTTTACGGTacaaaaaatgatagaaatatttgaaattagCTGGAAAAGAACTATTTTCTGACAGACTAACGGAGACCTAACTTAGATTTCAAGCTGCGTGATTATATTGAGCTTGGTCACAAAGGTAAATatgaaatcaaatgaattaaacCGAGCGAAAGAGGTTGATAATCAGAGTCTTCATTCAACAGTCGCTAGATTTGGAGATGTAATTAAAAGCAACGATTTGATGGAAAATGAGTTAAAAGCAGCAGAAACGTCAATGAGTTTATGTAATGTGGACAGTGAAGTTGATTTGGATGTCACGGCGTTTGGCTGCCAGGACGATGATCAAGCCCATGGCCTATCTCAAAATGAGTCCAAAGATTTAGATGAAGACAGAATTTCTGAGAGAAATCTTAGTGAGGTTGTTGAAGAAGTTGATGTGATAGATGTTGGATTTAATGACTATCCTTGTGATCAAATTTCTGGCTCACAATTAAGCATGGTGGATCATGACAAGTTGGGAAAAATCAACAGCAAGACCTATAATGAAAGGTTATTTCAGTTGCAATTTGAAACATTggataagaaaacaaaaagtgaagcTCATGGTGTGGAAAAGGAGTCCCCTACTATAGAGACTAACCTGTGGCATGACCAGTTTTTGAATGGCAATGGAGAGGATGATGACTACAATCGCTTCTATTTTGAGTCTGATCATTTGGCACTAAAAGATAATAAACACTATCATTTATTGTTGCAAACGTTGCTGGTTTTGGAGTCTCAGAGGAGTCAAGCTGTCAAGGATCTTGATAACCTTTATGAACAGCAGGTGAAAGCTCTCCAGGATCCTGTTAGCTTTGTGGAGAAGCTCCAAAATAAGGAACACTTAGATCTCCCACCGCGGCAGAAGATTGTGAAGCTGCCACCAGTTCCTTGGGAGGAGTATACAGTATCACTGAGTGCAATAGAGAGACAGAGATTGAGTAATCCACATCTCACTAGAGCCAGTGCAAACAATGTGGGAAAAGCAACTGAATCATCATTGCAAAGTTCTGATGCAAGTGAGACCTCCTCAACTGCACCTTCAGAGAGCAATGTATACAGTGTCTTTGGAGGAGGGTTTGTGGCAAGCAGGCAAGGAAAACCACTAGAACGAGAAAGTCTGACAAGTGCCTTCACTCCAAGAGGTGGTGACTTAAAGAATGGACAAAGCGATATGAAACCAGTAACCTTCAATCAGCCATGGACTACTGAAGAACAGGCTAAATTGGAAAAGTTGTTGCAGATTTATCCCCAGGAGGAGATTGAATCCAAGAGATGGGAGAAAATTGCTGCTGCCCTAGGGAACAGAACTTACAAACAGGTTGCCAGTCGAGTTCAGAAATACTTCATCAAGTTAGCTAAAGCAGGACTGCCTGTACCTGGTCGTGTGCCCAACATACCTCGGTTAGGAACCAGGAGTAAACGGTCCTCCCATCACTATCAGACTCTTGGGTTTCGAAATTCCACATTTTTCCCTTCCTATCGACCAAAAGTTTTAATGGACGAAGATGACGAAATCTCAAGTGTAGCTACGGATGATACGACCGGATATCCATCGGATGAAGAAACTGTGCCAGTAGATCAGCGGAATACAGAGGAATACAGAGAACTTGTGGAGCTGAAGAGACTAAAGAGGCAGAAACTGACGGAATATCAGCAAAGTGAGATAGCTGTCCAGCACCATGGCTTCATGTGTGATGGCTGTGGAATGAATCCAATATCAGGCACAAGATGGCACTGTACCGACTGCTCAAAAGATGTTAGTGTTGATTTGTGCACGGAGTGCGCAGAAAGGGGAAATGTGAATGTGGGTGTTCACACAAGTGAACATCACCTGGAACCAGTGTATTCTAGTTCTACGTTTTTCGTGGATGGAGACTATCTTGGACTCAGCAGAGGCAGCACTAGTGCTGGTTATAATTACCTGGATACCAATTTCCTACCCTCTACTGCCAGCTAGCACAAAAGAGCACAAGGTGTAAAGCGCTTTACCCAATCTGAGCTAAGACAGGCTTGTATTCGGCGTCCTACGCGGGAAAATTCGGAAACAAGAAGTGACTGTCGTGTTTCGTCCAGCTCCTGATTGGTTACTTCTAGAGCATACTCATCCTGATTAGTCGGTCACTATGAGATTCGCGTTCTTAAGTGACAAATCGTGACAGGTCTATTAACTTGTTGAAAGAATAGGTTCCAGATGTTCAGTTTTCGCCTGAAAAACattctgaacagtttttgtCACTGATTCTTTATCATTCTCTTTACTAAGGGTCTGAAAACCAGACCTAAAGATAAAGACGAGGGCCAGTCACACGTAAGCTGAACACATCAATCTAGTTAGGAACTGTTATTGAGTGTATGAATTGACCATTTCACATTTGTGTAATTAGTTGCCAATCCTTTGATTTACAATGAGactgaaggtgaccttgttttgatagagaccagtatctagtaagcatgataaaaaattaatttacttttgaaAAGCAGCACATTTTGTATCATAACGAAGTCACCCTTAGCCttactcctgttcaaaggcgTGGCAACCtagcacgcaactgtaaaatggacttcCTCAAAGCTAAAGTGAATGAAAAGAGCGCGCGGTTTTATATCTAACGGAGAGTACTTTATGTCCCTGTAAAGTGTTGTATCTCGGCAATTGTCCGTGCAAATGTACACCGGTACTTAATTGGACTCCTATGTAATTTTTCATacatcatatatttttttaagccAAGTTGTAAGTGTGGAAAACAAGCGGCAatttaaagaataaattattctGTTCGTCCTTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR037830 all species →	Family	ZZ-type zinc finger-containing protein 3	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22705 all species →	ZINC FINGER, ZZ DOMAIN CONTAINING 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24536	ZZZ3; ZZ-type zinc finger-containing protein 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.