Gene detail

Detailed information of XP_058952537.2 in Pocillopora verrucosa

Genomic Location: chr8:12870439...12886925
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131779939

ATGTCTTGTATTCACTATAAGTTCCGAAGTGCTTTAGAATATGACACAATTACATTCGACGGACTTTCTATTTCGCTTGCCGACCTTAAACAGTCAATCATTACTCAGAAAAAATTCGGAAAGAACAGTGATTTTGACCTGGAGGTTACCAATGCTCAGACGAAAGAAGAATACAAAGATGAGATGACAATGATACCCAAGAATTCTTCTGTGGTTGTTCGTCGTATTCCAGTTGGTACAAAGAGTAAAGCTCAACTGGCAGCGGATAGAGCATCTCCTTTTTCAAGTGGAGAGCAGAAAACAAGTGGTTTCCAAGATTACCAAGTTGTAAAATCCAACAAGTTAAGCAAGGTGACTGATTTGGCCAATGCTGATGCATCAGAGGAAGATAAGCTGAAGGCAATGATGAAACAGTCAGGAGAGGATTGGGATCCATCACAGTATGTGAAAGGGCGTCGTCCTTATGCACCAGGTGTACCAGTGCCACAAAGCTATGTTTGTTACAGGTGTGGAAAACATGGGCACTTCATAAGGAACTGTCCTACCAATGGAGATGCTAGATTTGATGTTCCAAAGGTGAAACGCACAACAGGTATTCCTCGAACTTTTCTGAGCACAGCAGAGGGTACATCATCACCACCAACCAGTAGCCTGTCACCTTCAAATCAAGAAGATGAAACCAAATCAAAAGGAAAAGAAAAAACTCCACAGTCTGCTGGTAACAAGAAAGTTCCTGCTGAGCTACGGTGCCCCTCTTGTAGCAATTTACTGACAGATGCTGTGCTCATCCCATGTTGTGGAACAAGTTACTGTGATGACTGCATAAGAAACTACCTTTTGGAGAATGATCAGGAATGTCCATCATGTGGAACAGAGAATGTTTCACCTGATTCACTGGTTATTAACAAACAGCTTAGGCAGGCTGTGAACACTTTCAAAAATGCCAGACCTGCCAGCCCTTTTGTAACCCAATTGCCACCGAAGACTAATGAGGCAACTGCACCAACTACCACCAACACAGATGGTAAACAAATCACACCAGCAACTAAGGTTGAACCTGCAAGTAGTCAAGAAAAAGCTGCCTCAGATCCTAAACCAAATGAACCTCAAGCAACAAAACTGACAAGTGATGCTGAAAATAGGATAAAAGAAAGTTCCCCAAAGCCTGTCAAACAAGTATCAAGTCAGCCTCAACAAATCAGAATCCACCACCGTGATGGTCCAATACAGCAAGGTCTTGGTTTGAATCAAGTCAGGCTTCCTTTTGATCCTCGTAGAAGACCAGGCGATTTTCCCCTAAGGGGACCACCTCGTGTACCTGAAATGCGTCACGGGTTATCGGAACCCATTAGACCCCACGGACTTCCCCCGGAACATGTGCCCCGTGTACCTGCTATCCGTCCGGGTTTGAGTGGTCTTCGCCACCCCGGTCCACCTCCTTATCTCCCCCCGGCAATCAGAGGGATGCATGCAGCAGCACCTGCTCTTCCTCGTATGCCTCCTGTTCCTGCCCTGGTTGCGGCTCCTTTACCACGCCATCCAGCCTTCGGACCACCCGCGATGTTCGACCCACTCCATCCTGGCGACCGACCTGGGTCTCTCACGCCGCCAATGTCCGAACGAGAGTTCTACAAAATGCAAAAGAAACTAAAAACGAGAGGCAAGAAAAAGCGAGAGCATTCGTCTACCACTCGTCCCAAAAAAGTTCCTAGGAAGGAGGGTAGTAGCTTCGACTTTGATGACGAGCTCCTAGAATACAGAGAACTTCAGAAAAGCCGTCAACGTTTACGTTCTCGTTCTTTGACTCCAACTCGCTCATGGTCGCGCTCGCCATCACTCCGATCACGGTCAAGGTCACGGTCCTTTTCACGCTCAAGATCGCGGTCACGTTCCCTTTCACGATCCTCTGGAAGTCCCGCACGAGCGCCCACTCCAGAGGGCTGGGACGAATCCAGGTCTCCTTCGCCTACTCCGTCACGTGGTCAGAGTGGCGGCGCAAATTCTGCAGAAGAGCAGAAAAAGAGACATAAAAAGAGAAGAAAGGAACAGAAAAGTACAGGACAGAAGAAACAGAAGACTTCGCATAAAGATGAAAAGCCAATGGAACAGAAGGCGGGAATTGGTGGTGTTAAGGAGGAGGAGAAAAAGAAGCTCAAAAAGCAGAATGTGAAAGATGACAAGGGTGAGATGAAGGACAAGACTACGAGGGTAGAAAAAGACAAAGATAAACCGAAAGAAAGTAAAACGAGTAAAGAGAAAGAAAAATTAAAGAAAAAGGATAAGGACAAGAAAATAGTTAGTGATAGGGAGGGGAAAGGAAAGGAGAGAGACAGCAAGAAACAGGGTGAAAAGAAATTAGTAAAGAAAAGCAAAGAGGGAAAGGAAATAGGAAAGAAAAGCAAAGAGGGAAAAGAGAAACGGAAGAAAAAAGATAAGGATAAGAAAGAGGAGTCCTCGGGTAAAAAACGTAAGAGTAAAAAGAAACACAAGAAACATAAACGGCATAAAAAGGGAAAAAATAGGGGAGAGAAGGCTGGCAGTGAAGAAGAGGAGGCAGGGAATAACTTTGAAAGTAAGGAGAATGAAAAAAAGGATGAATCATCTGAGGCTGGCAACCCTGATGGTAAAACTACCACAGATGAAGAAAAAGATGATCGAGGAACCGATGGAGCTGGGCATCAGGAAGAAAGTGATGAGGAAGGAAGTGATAGTGATGAAGGAGATAAAGAAGATATGGAGGAGGATGGAAAAGACCAAGAGGGGAAAAAAGTACACGAGAGTGATGATGTCTGGGAGAAGTCGAGTGAAAGTGATGAAGATATGGCAGAGAACGGAAGCGACTTGGAGGAACAAGACTGCAGAAAAGCTAAGACGTCTATGGCTAAAGTAAGTGAAGTGAAAGGGAAGAATCAAAGAGAAGAGGAATTACTAGAAAGTGATCAGGAGGCTGAAAAAAGGGTGAAAGGAAATGAAGAGAGGCTTGAAGGAAAGGAAAGCGACACTGATAATGATTTGATGGAAAAGAAATTGCTCGAAAGTGACAACGATAGTGACCGAGAAGCTGAAAATACTAAAGATTGTAAACCAGAGGGTGAACAGAATGTTGAGAAAGTGGAAGAAGAAGAGATGGAAAAACACGAGAGCGATAGAGAAAATGAAGTGAAGACTGGAAATGGTCAGGAGGGATTCCATCCAGAATTAAGTGCTGAACGATCCAAAGAGGAAGAATCAAGATTTACTGCGAAAAAACGAGAAAATGGGAACCATCAAGTAGAACTGCAAGAGGATAAGAATAGATAG

Transcript

rna-XM_059096554.2

TACTCGTGTCGTGTCGCGTTGAGGTTTCGGCTACCGTTTTCTTATTTCAGCAGATTTCTTTAGGTAGTTTAGAGTTGTTGGATTTTGCCTTTATAATAGCTTCactcatttatttatctttctttctatGCGAGTGAATTTTCCATTATGTTTCGTTTTCCCCGCCTTATCTAGCTTCAGAAAATGTTGAACTGATTCGTGTTCCTTGTTGAGGTGACTCTATCGTTTGTGCTATTTCGTTCAacgttttttcgttttttgttagAATTTTGTCGGTATCCTAATGTCTTGTATTCACTATAAGTTCCGAAGTGCTTTAGAATATGACACAATTACATTCGACGGACTTTCTATTTCGCTTGCCGACCTTAAACAGTCAATCATTACTCAGAAAAAATTCGGAAAGAACAGTGATTTTGACCTGGAGGTTACCAATGCTCAGACGAAAGAAGAATACAAAGATGAGATGACAATGATACCCAAGAATTCTTCTGTGGTTGTTCGTCGTATTCCAGTTGGTACAAAGAGTAAAGCTCAACTGGCAGCGGATAGAGCATCTCCTTTTTCAAGTGGAGAGCAGAAAACAAGTGGTTTCCAAGATTACCAAGTTGTAAAATCCAACAAGTTAAGCAAGGTGACTGATTTGGCCAATGCTGATGCATCAGAGGAAGATAAGCTGAAGGCAATGATGAAACAGTCAGGAGAGGATTGGGATCCATCACAGTATGTGAAAGGGCGTCGTCCTTATGCACCAGGTGTACCAGTGCCACAAAGCTATGTTTGTTACAGGTGTGGAAAACATGGGCACTTCATAAGGAACTGTCCTACCAATGGAGATGCTAGATTTGATGTTCCAAAGGTGAAACGCACAACAGGTATTCCTCGAACTTTTCTGAGCACAGCAGAGGGTACATCATCACCACCAACCAGTAGCCTGTCACCTTCAAATCAAGAAGATGAAACcaaatcaaaaggaaaagaaaaaactccacAGTCTGCTGGTAACAAGAAAGTTCCTGCTGAGCTACGGTGCCCCTCTTGTAGCAATTTACTGACAGATGCTGTGCTCATCCCATGTTGTGGAACAAGTTACTGTGATGACTGCATAAGAAACTACCTTTTGGAGAATGATCAGGAATGTCCATCATGTGGAACAGAGAATGTTTCACCTGATTCACTGGTTATTAACAAACAGCTTAGGCAGGCtgtgaacactttcaaaaatgccAGACCTGCCAGCCCTTTTGTAACCCAATTGCCACCGAAGACTAATGAGGCAACTGCACCAACTACCACCAACACAGATGGTAAACAAATCACACCAGCAACTAAGGTTGAACCTGCAAGTAGTCAAGAAAAAGCTGCCTCAGATCCTAAACCAAATGAACCTCAAGcaaCAAAACTGACAAGTGATGCTGAAAATAGGATAAAAGAAAGTTCCCCAAAGCCTGTCAAACAAGTATCAAGTCAGCCTCAACAAATCAGAATCCACCACCGTGATGGTCCAATACAGCAAGGTCTTGGTTTGAATCAAGTCAGGCTTCCTTTTGATCCTCGTAGAAGACCAGGCGATTTTCCCCTAAGGGGACCACCTCGTGTACCTGAAATGCGTCACGGGTTATCGGAACCCATTAGACCCCACGGACTTCCCCCGGAACATGTGCCCCGTGTACCTGCTATCCGTCCGGGTTTGAGTGGTCTTCGCCACCCCGGTCCACCTCCTTATCTCCCCCCGGCAATCAGAGGGATGCATGCAGCAGCACCTGCTCTTCCTCGTATGCCTCCTGTTCCTGCCCTGGTTGCGGCTCCTTTACCACGCCATCCAGCCTTCGGACCACCCGCGATGTTCGACCCACTCCATCCTGGCGACCGACCTGGGTCTCTCACGCCGCCAATGTCCGAACGAGAGTTCtacaaaatgcaaaagaaactaaaaacGAGAGGCAAGAAAAAGCGAGAGCATTCGTCTACCACTCGTCCCAAAAAAGTTCCTAGGAAGGAGGGTAGTAGCTTCGACTTTGATGACGAGCTCCTAGAATACAGAGAACTTCAGAAAAGCCGTCAACGTTTACGTTCTCGTTCTTTGACTCCAACTCGCTCATGGTCGCGCTCGCCATCACTCCGATCACGGTCAAGGTCACGgtccttttcacgctcaagatCGCGGTCACGTTCCCTTTCACGATCCTCTGGAAGTCCCGCACGAGCGCCCACTCCAGAGGGCTGGGACGAATCCAGGTCTCCTTCGCCTACTCCGTCACGTGGTCAGAGTGGCGGCGCAAATTCTGCAGAAGAGCAGAAAAAGAGACataaaaagagaagaaaggaacAGAAAAGTACAGGACAGAAGAAACAGAAGACTTCGCATAAAGATGAAAAGCCAATGGAACAGAAGGCGGGAATTGGTGGTGTTAAGGAGGAGGAGAAAAAGAAGCTCAAAAAGCAGAATGTGAAAGATGACAAGGGTGAGATGAAGGACAAGACTACGAGGGTAGAAAAAGACAAAGATAAACCGAAAGAAAGTAAAACGagtaaagagaaagaaaaattaaagaaaaaggataaGGACAAGAAAATAGTTAGTGATAGGGAGGGGAAAGGAAAGGAGAGAGACAGCAAGAAACAGGGTGAAAAGAAATTagtaaagaaaagcaaagagggaaaggaaataggaaagaaaagcaaagaggGAAAAGAGAAACGGAAGAAAAAAGATAAGGATAAGAAAGAGGAGTCCTCGGGTAAAAAACGTAAGAgtaaaaagaaacacaagaaacatAAACGgcataaaaagggaaaaaataggGGAGAGAAGGCTGGCAGTGAAGAAGAGGAGGCAGGGAATAACtttgaaagtaaggagaatgaaaaaaaggatgaaTCATCTGAGGCTGGCAACCCTGATGGTAAAACTACCACAGATGAAGAAAAAGATGATCGAGGAACCGATGGAGCTGGGCATCAGGAAGAAAGTGATGAGGAAGGAAGTGATAGTGATGAAGGAGATAAAGAAGATATGGAGGAGGATGGAAAAGACCAAGAGGGGAAAAAAGTACACGAGAGTGATGATGTCTGGGAGAAGTCGAGTGAAAGTGATGAAGATATGGCAGAGAACGGAAGCGACTTGGAGGAACAAGACTGCAGAAAAGCTAAGACGTCTATGGCTAAAGTAAGTGAAGTGAAAGGGAAGAATCAAAGAGAAGAGGAATTACTAGAAAGTGATCAGGAGGCTGAAAAAAGggtgaaaggaaatgaagagaGGCTTGAAGGAAAGGAAAGCGACACTGATAATGATTTGATGGAAAAGAAATTGCTCGAAAGTGACAACGATAGTGACCGAGAAGCTGAAAATACTAAAGATTGTAAACCAGAGGGTGAACAGAATGTTGAGAAAGTGGAAGAAGAAGAGATGGAAAAACACGAGAGCGATAGAGAAAATGAAGTGAAGACTGGAAATGGTCAGGAGGGATTCCATCCAGAATTAAGTGCTGAACGATCCAAAGAGGAAGAATCAAGATTTACTGCGAAAAAACGAGAAAATGGGAACCATCAAGTAGAACTGCAAGAGGATAAGAATAGATAGATACCTAACAAATTTTGTGTATAGTTAAACAAATCAAAAGTATAACATCAAACTTCTCGCTTCTGTCGGTAAGATTTCTATCCTTTGACCAACCAGgtgggggagagagagagatcaGACCAGATGTGAGAGCGATCTTCCGAAGTTGAACTgcctttgattttaatgaacttgttcgtctttgttttgatttgtccTGTGGTGACTCGTAACGGGAGCATACAGTGCTGTCCATCATCAGGGTGAAAGGGTCCTAGGAAGGTTGAGTCACAATGACTCTTCCCATGTTTCTAGCATATGTTAATtattaggttaaaaaaaaaaaaaaaagaaaagaaaagaaaaccactAGGTTTCAAATAGGTTGAAATTGTACCTAACTGCTTAAGAAAAACGAGACCAGTCAAATCCACAGTGaaactgtacaaaaaaaatttaaatgctcCGTTATCAAACATTAGTGCGTCATGTTGAACTGACACTTAGCTTTTCTAATACCTGTTTATTAAGTATGCTTGAATAACCGTGTggtaataaaattatatttatttttttt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|DWNN · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08783 all species →	DWNN	DWNN domain	Domain	Interproscan
PF13696 all species →	zf-CCHC_2	Zinc knuckle	Domain	Interproscan
PF04564 all species →	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR014891 all species →	Domain	DWNN domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR025829 all species →	Domain	Zinc knuckle CX2CX3GHX4C	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058952537.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.