Gene detail

Detailed information of XP_058953282.2 in Pocillopora verrucosa

Genomic Location: chr3:2520384...2539168
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131780691

ATGGCGTCCATTCTCGATCAGTACATGCAAGCTTCAGCGGGAGAAAACTTGAATCCGTTTCTAGGACCAGACGTTACGGAACCTATATCAACTGGATACGTAGAAGTTAAGAGTGAAGATGATGTTCCCATTTTTCGGCGACAGAAAATCAACTTCAGACCACCAAGCAATATAGTTGATGTTGTTGTGTGTAACAATATGGTTGCTATAGCACTGAGTAACAATGTGCTGATGAGACTGGATTTGACAAACCCTAGTGAAATAGATAGCGTTGATATCACCAAACGAATGGATGACTCTGTTCATAGAATCTTCATGGATCCAACTGCCAGACATCTTATTGTCTGCATGAAGTCTCAAGAGTCATTCTATTTAGCCAGGAATTCCAAGAAGCCCAAACCATTAGCAAAAATGAAGGGACATCTGATCAATGCCATTGCATGGAATAAATCAAAACTGACTGAGAGTTCTACACAGACAATTCTTCTGGGGACAACCAAAGGGCTGGTATTTGAAACAGAGTTAGAGCCAGAGGAGAAGTTCTTTCAAGGTGGTTTGGAAAAATTTTGGAAGCAATTGTACAATGTGAATTCAATTGGTGGTCCAGAAGAGTCAATTTATGGAATCATGTTTGAGAAGTTTCCTGTGTCTCCAAAATCTGACAGGAAATACTTCGTTATGGTATCAACACTGAGCCGCCTTTATCAGTTTATTGGTGATGTAACAGTTACAGACTCCCTGGATTTACAGCCACTGTTTGCAGAATATGAGAGCAACCCTGCACCTTTCCTTGAGATGCCAGGCCATTTGGATTCTAGTGAATTAGCTCTGTTTTACCCCAAGATTAGGGGTCTGCCAAGTTCTTTTGCGTGGCTCACAGGAAGTGGTGTTTACTTTGGTAAACTAGACTTTGGTCCCCCTGAGTCTTGTGATAATATCACAGCAGAAACAAGACTATTACAATATGGGTTTGAGGAAGGAAAGGAGACAACACCTCCTCTATCCATTGGACTGACAGGTTTCCATGCTCTTATGCTGCATAAAGACAAGTTTCAGGCAGTATCACTTCTCAGTGAACAAGTTGTGTTTGAAGATCAGTTTCCACCTCGGTATGGTGCAATGAGAGGACTCTTTATTGATACAGTGAAGAAGACTTTGTGGATATTCTCAGATTCAGCAATTTTTCAGTATCATGTTACAAGAGAGAGCAGGGATGTCTGGAAAATGTACCTTGAAAGGGGAGAATTTGAGTTGGCCAAGGAGTATTGCAGGGATAATCCAGCAAATTTGGATAAAGTGTTAACTAAACAAGCTGAGGAACTATTTGAAAGCAAGAGTTACGCCAATGCTGCCAGATGCTATGCCCAAACTCAAGTATCATTTGAGGAGGTTGCCTTAAAGTTTATTCAAGTTGAGGAGAGCCAGGCACTCAGGATGTTTCTTTTAAAAAAGCTAGATAGTATGAAATACCAGGACAAGACACAAATGACTATGCTGATAATGTGGCTGATCGAATTGTATTTGAACGACTTGGGAGGTTTAAAGGAAGAAAACGCTAAACTAAAGTACGAAGGCTTACAGGAAGAATTCAGGAAGTTCCTTGCTCAAACCAAAGTAAAGACATGTCTCGATCAAAACAGGAAGACAGCCTATGATTTGATCTCTAGTCATGGAGATGTAGAGAACTTAATATTTTTTGCCATGTTTATGCAAGATTTTGAGCATGTTATCAGTCATCATATTCAGCATGATGACTTTATGGCTGCATTGGATGTCCTCACTAAACAGACAGATACGGAGCTTTATTACAAGTTCTCTCCTGTGCTAATGCAGCACATTCCGCGGCAAACGGTAAATGCCTGGACTGAACAGAAAAAGAAGAAGCTGGATCCACGCCGACTGATTCCTGCGCTGGTTCACTATCACCAACAAGGGAAGTCAACTCAGACCGAGGAGGCCATCCGCTACTTGGAGTTCTGCATAGAGAGACTCGGAAACAGAGACCAGGCTATTCACAATTATTTGCTGTCGTTATACATTGAACAAGAAGATGATGAGTCATTATTACGATACCTGCAAATGCAAGGACAGGATCCAGAAGAAGTTTGCTATGACATGAAGTACGCCTTGAGACTGTGTTCAGAACATGACAAACAGAAAGCCTGTGTTCACATCTACAGTACCATGGGACTCTTTGAAGAAGCGGTTGATTTGTCTTTAAAGGTCGATGTAGATCTTGCGAAGATTCAAGCCCAGAAGCCGCCGGAGGACGACGAAGTGTTGAGGAAAAAACTCTGGCTTAGAATTGCGCGACATGTGGTGGAAGAAGAAGGAGATGTGAAAAAGGCAATGGAGTTTTTGAACCAAAGTGAACTTCTAAAAATTGAAGATATCCTTCCATTTTTCCAGGATTTTGTTACCATTGATCATTTCAAGGATGCTATTTGCTCGTCACTTCATGAATACAATCAACACATTGAAGAACTAAAAAGCGAAATGCAAGAAGCTACAGAAAGTGCCAAAACGATACGAGGAGACATCCATGAAATGAGAAATAAATACAGGGTTGTACCAGCTCAAGAGAAGTGTTCGATATGCCTATATCCACTGCTTACAAGAGGCTTCTATGTGTTTCCCTGTCATCATTCCTTCCATTCAGATTGTCTCAAGAATGAGATTTTACCACATCTTAAAGAAAAACAGAGGGCTAAGGTTCAAGACCTATTTAACCAGCTCTACGCGACGTCAAGAACTGATTCATCCTCGGTTTCATCGACCTCACGAGAAACTCTCAAGAATGAGCTGGATGACCTGATCGCATCAGAATGTCCTTTCTGTGGGGAAATTATGATCAGATCTGTGGATCAACCCTTTATCTCACCAGACGAATATGAAAGTGTATTGGAAAGCTGGCAGTGA

Transcript

rna-XM_059097299.2

TGGAACCTTCGCTAAGATGGCGTCCATTCTCGATCAGTACATGCAAGCTTCAGCGGGAGAAAACTTGAATCCGTTTCTAGGACCAGACGTTACGGAACCTATATCAACTGGATACGTAGAAGTTAAGAGTGAAGATGATGTTCCCATTTTTCGGCGACAGAAAATCAACTTCAGACCACCAAGCAATATAGTTGATGTTGTTGTGTGTAACAATATGGTTGCTATAGCACTGAGTAACAATGTGCTGATGAGACTGGATTTGACAAACCCTAGTGAAATAGATAGCGTTGATATCACCAAACGAATGGATGACTCTGTTCATAGAATCTTCATGGATCCAACTGCCAGACATCTTATTGTCTGCATGAAGTCTCAAGAGTCATTCTATTTAGCCAGGAATTCCAAGAAGCCCAAACCATTAGCAAAAATGAAGGGACATCTGATCAATGCCATTGCATGGAATAAATCAAAACTGACTGAGAGTTCTACACAGACAATTCTTCTGGGGACAACCAAAGGGCTGGTATTTGAAACAGAGTTAGAGCCAGAGGAGAAGTTCTTTCAAGGtggtttggaaaaattttggaagcaaTTGTACAATGTGAATTCAATTGGTGGTCCAGAAGAGTCAATTTATGGAATCATGTTTGAGAAGTTTCCTGTGTCTCCAAAATCTGACAGGAAATACTTCGTTATGGTATCAACACTGAGCCGCCTTTATCAGTTTATTGGTGATGTAACAGTTACAGACTCCCTGGATTTACAGCCACTGTTTGCAGAATATGAGAGCAACCCTGcACCTTTCCTTGAGATGCCAGGCCATTTGGATTCTAGTGAATTAGCTCTGTTTTACCCCAAGATTAGGGGTCTGCCAAGTTCTTTTGCGTGGCTCACAGGAAGTGGTGTTTACTTTGGTAAACTAGACTTTGGTCCCCCTGAGTCTTGTGATAATATCACAGCAGAAACAAGACTATTACAATATGGGTTTGAGGAAGGAAAGGAGACAACACCTCCTCTATCCATTGGACTGACAGGTTTCCATGCTCTTATGCTGCATAAAGACAAGTTTCAGGCAGTATCACTTCTCAGTGAACAAGTTGTGTTTGAAGATCAGTTTCCACCTCGGtatggTGCAATGAGAGGACTCTTTATTGATACAGTGAAGAAGACTTTGTGGATATTCTCAGATTCAGCAATTTTTCAGTATCATGTTACAAGAGAGAGCAGGGATGTCTGGAAAATGTACCTTGAAAGGGGAGAATTTGAGTTGGCCAAGGAGTATTGCAGGGATAATCCAGCAAATTTGGATAAAGTGTTAACTAAACAAGCTGAGGAACTATTTGAAAGCAAGAGTTACGCCAATGCTGCCAGATGCTATGCCCAAACTCAAGTATCATTTGAGGAGGTTGCCTTAAAGTTTATTCAAGTTGAGGAGAGCCAGGCACTCAGgatgtttcttttaaaaaagctaGATAGTATGAAATACCAggACAAGACACAAATGACTATGCTGATAATGTGGCTGATCGAATTGTATTTGAACGACTTGGGAGGTTTAAAGGAAGAAAACGCTAAACTAAAGTACGAAGGCTTACAGGAAGAATTCAGGAAGTTCCTTGCTCAAACCAAAGTAAAGACATGTCTCGATCAAAACAGGAAGACAGCCTATGATTTGATCTCTAGTCATGGAGATGTAGAGAACTTAATATTTTTTGCCATGTTTATGCAAGatTTTGAGCATGTTATCAGTCATCATATTCAGCATGATGACTTTATGGCTGCATTGGATGTCCTCACTAAACAGACAGATACGGAGCTTTATTACAAGTTCTCTCCTGTGCTAATGCAGCACATTCCGCGGCAAACGGTAAATGCCTGGACtgaacagaaaaagaagaagctgGATCCACGCCGACTGATTCCTGCGCTGGTTCACTATCACCAACAAGGGAAGTCAACTCAGACCGAGGAGGCCATCCGCTACTTGGAGTTCTGCATAGAGAGACTCGGAAACAGAGACCAGGctattcacaattatttgctGTCGTTATACATTGAACAAGAAGATGATGAGTCATTATTACGATACCTGCAAATGCAAGGACAGGATCCAGAAGAAGTTTGCTATGACATGAAGTACGCCTTGAGACTGTGTTCAGAACATGACAAACAGAAAGCCTGTGTTCACATCTACAGTACCATGGGACTCTTTGAAGAAGCGGTTGATTTGTCTTTAAAGgTCGATGTAGATCTTGCGAAGATTCAAGCCCAGAAGCCGCCGGAGGACGACGAAGTGTTGAGGAAAAAACTCTGGCTTAGAATTGCGCGACATGTGGTGGAAGAAGAAGGAGATGTGAAAAAggCAATGGAGTTTTTGAACCAAAGTGAACTTCTAAAAATTGAAGATATCCTTCCATTTTTCCAGGATTTTGTTACCATTGATCATTTCAAGgaTGCTATTTGCTCGTCACTTCATGAATACAATCAACACATTGAAGAACTAAAAAGCGAAATGCAAgAAGCTACAGAAAGTGCCAAAACGATACGAGGAGACATCCATGAAATGAGAAATAAATACAGGGTTGTACCAGCTCAAGAGAAGTGTTCGATATGCCTATATCCACTGCTTACAAGAGGCTTCTATGTGTTTCCCTGTCATCATTCCTTCCATTCAGATTGTCTCAAGAATGAGATTTTACCacatcttaaagaaaaacagagGGCTAAGGTTCAAGACCTATTTAACCAGCTCTACGCGACGTCAAGAACTGATTCATCCTCGGTTTCATCGACCTCACGAGAAACTCTCaagAATGAGCTGGATGACCTGATCGCATCAGAATGTCCTTTCTGTGGGGAAATTATGATCAGATCTGTGGATCAACCCTTTATCTCACCAGACGAATATGAAAGTGTATTGGAAAGCTGGCAGTGATTTTTAACCATAGAATTATTTATGGCATATCTTCTTTAAGAGCAGAATTTATTTCATCCAACCTCCTTACCCGCTGTTATCACATTTGCTTGGCTGACATATCATTGTGTGAAATAAAGACATGGCAGCGCGAGGAATCGTACCCCAGCTGGTTGGTGCTTTTGAACTAAGCTCCCAGCTATGCACGGTGTTGACATCCACTTGTAAGAACCTTTGTCAAAGCTTCGAGATGCTATTGCTCAACACTCCCTTTCTTGAGTACGGCGTGGATAAGATTATAGTAATTTGAATCAGATGAAAACGAATTCAGTCAAAGACAAGAGTTTTGTAATACAAtttagacaaaataaaaattaatttctaagAAAGAATAAGCATGCAATGCAATGTTTTGATTGCTGCTCAGACCTACTTTCGTTTTGAAACAAGAATGTTGCCCATCACCCCCTCAACTCCAAGCCCATTCATTCCTTCGCCCCACCCTGGGAAATCTACAGTTTTAAGAATGCTCTCAATGCCCCATACTGAAGCAAAACCCattgacccttaagagtgaccagcatctaatttctccttacaatatcacccctgaatcatatattggtcaggagaataaaggaaatgatcaccaactgaagaagttcTTGAATCTTAAACTAGAGGAATACAAGTAGTTCTTAATCAAATTCTATACAAGATGCTTCAACCATTTAACCCCtttgagtgactagcatctactttctgaatcaaacatcaatgtcacaagattaaaggaaatgatcatcaaagaagcccttgattttaaaactatttctCTTTGTCATGTCCTtgggaaatgtatgaagaacagtatggagaatttaagcactgatg

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05131 all species →	Pep3_Vps18	Pep3/Vps18/deep orange beta-propeller domain	Repeat	Interproscan
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR007810 all species →	Domain	Pep3/Vps18/deep orange, beta-propeller domain	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0007040 all species →	Biological Process	lysosome organization	Interproscan
GO:0008333 all species →	Biological Process	endosome to lysosome transport	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20181	VPS18, PEP3; vacuolar protein sorting-associated protein 18	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.