Gene detail

Detailed information of XP_058953429.2 in Pocillopora verrucosa

Genomic Location: chr1:29297661...29314613
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131780856

ATGGCCAGTATGGTAAATCAAAACAACAAGACATCTTTCTCACATGCAGATAGTAATGTGGCTGCTGAAGAAGACATATCGGTTAAGGTGTCTGATGATGACACTTTAGCAGTACCCAACCAAAATAATTTTGCAGACTCTGGCTCAGTGTGTATCGGTGTAGGCAATGAAGAGGATGATGTCTTTGACGGTAGCATGACTTCTATTTTTCAAGATGACAAGAAGGGAGTGTTTCTTCCTGGTCTTAAAGTTACTGCCAAAATCATTGATGTTCAACGTGCACCAAGAGCTCATCCTTTTAACCCTAACTTATACACTATAGAACTAAGGCATGGCAGCTTCACTTGGATCATCAGGCGACGTTACAAGCATTTTGTAAAACTTGATGCAGAACTGTTTTTTCACAAAGTTAATGTTCGCCAACAAAGCATCAGAAGGGATCTTAGAGGTGATCACAGTGGAGAGGGTCATGCTTATCTTCCAAGTCGTCACTTGCCCAAGCGACCAGACATGTTTGCTACAACACCCAATATGGAAAAAAGAATAAAGTCTCTGGAGAAGTACCTTCAGAGGATTTTGGACAGTCAAAGCTATCGTACTCACAAAGAGACTCTGAATTTTTTGGAGGTCAGCCATCTCTCATTTCATTTTGATTTAGGAGATAAGGGAAGGGAAGGTATTCTCAGAAAGCGGGCAGGAGGTCATCGATTTCCTGCAGGGTGCTGCAGTTGTTGCAGTGGTCTTTCATGGGGAATATGGGACAAAAGGTGGCTTCTTGTAAAAGATAGTTTTATTGCCTATGTCAGTCCCAAGGATAAACAACTAAGAGGAGTAGTGTTAATGGACAAAGAATTTACTTTCAAGTATGGAAGGAAACAGACTGGTGTGCGGAATGGCTTGCTGATCCATAACCAGGCAAGGCAGCTTCTGTTATCCTGTTGGACTGAAAGAAAGGCAAGTGAATGGATGAAATCAATTGTTCATGTTATGGCAACTACTGGTGCTGACTGGATTAAGGAACATCCTCACAGCTCGTATGCTCCAATCAGGGAGAACTGTTATGCTCAGTGGTTTGTCGACGGTGAAGCATATTTTGATGCAGTTGCTGATGCTTTAGAGTCTGCAGAAGAGGAAATTCTCATAACAGGCTGGTGGGTCAGCCCAGAAATATACCTCCGTCGGCCAGTCACTGCCGGCCATGAATGGCGACTGGATATGACGCTGAAGAGAAAAGCGGAGAGTGGTGTAAAAGTTTATGTTCTAATCTACAAAGAAGTTGAGCTGGCTCTAACGCTGAACAGTGCGTACACTAAAACTACTCTGATGGGTTTACACCCAAACATCAAGGTGTTGCGGCATCCAGACCACCTTCCTGGGGCAGGTGTAATATATTGGGCTCATCATGAAAAGTTGGTGGCCATTGACCAGAAGGTGGCCTTTATTGGAGGTCTCGACCTTTGTTTTGGTCGCTGGGACAATCATTTGCACCGTCTGACCGACTTTGGATCTGCAGTTCGGCCTCCAACGCTGAACAAAACGGAGGAACAGATCAGAAAAATTGGCGCTCTGTTTGTAGAAGGAACGCTGGAGGGATTTGACGTCCCGAAATGTTCCGACTTCACAGACAACGTCAAAGTAGAGATAGAACCCGGAACATCAGGAGGAAACAAACTTTGGCTGGGAAAGGATTACTCAAATCCAATCACCAGAGATTTCTTTGACGTCCATAGACCATATGAAGATTCCGTGGACAGAGGCCATGTTCCTCGGATGCCTTGGCATGATGTGGGCATGTGCGTGTTTGGTTTTCCCGCGAGAGACATCGCTCGACATTTCATTCTGAGATGGAATGCTACCAAGATTGAAAAGGTTAAAATGTATCATGACATCCCTTACCTTCTCCCGAAGTCGTACTCCAAACTTTCTAATGAAAGGCCAGCAACATTAGACGACTTTAACGTGGTGGATTGCCAAATACTCCGTTCCCTCTGTTCGTGGTCAGGCGGTGTTCCTCCAGAAAACTCCATCCATGAGGCATACATAAAGGCGATTGAAGCATCTCAACATTTCATTTACATTGAGAACCAATTCTTTATCACTTCTCTTTTCATTGACAATGTTAAGAATGAGATTGGACAGAACCTTTTGTGGAGAATAGAGAGAGCACACAGAGAGGGTGAAAATTTCAAAGTTATAGTCGTCATGCCACTCCTACCAGCCTTTGAAGGGGAGATTGGTACAGCCACTGGTCGATCGATTGGCGCCATTACTCACTGGAACTACAGGTCAATTTGTCGAGGATCGCATTCTCTCTTGCAGAGATTAACAGAACTTGTTGGTGATCCTTCCAAGTTCATAACATTTTATGGTCTGAGAACTCACTCAGAAATTCATGGAAAACCCGTCACAGAGCTTGTATATGTTCATAGCAAGATGATGATTGTCGATGACAATACAGTAATTATTGGCTCAGCAAACATCAATGACCGCAGCATGCTGGGAAAGAGAGATTCAGAAATAGCCTCTATCATGAAGGACAAGGAATTTGTTCCGTCCGTTATGGATGGCAAGGAATATCAAGCTGGCAAGTTTGCGTTCAACTTAAGATCAAGACTCTTCAGGGAACATCTGGGTTTATTAGATTCTCCTTCAGACGTAGACATCAGAGATGTTGTCTCAAAAAGTTTCTATGAGGATGTGTGGATGGCCACGGCGAAGAAAAACACTGAAATTTACGAGGAGGTGTTTCACTGCATGCCAACAGACCAAGTTCGTTCACTAAGCGACATGGCTGCTTATAAGAGTCTTAAAAACCTCGACAAAGAGGACCCTGGACAGGCACGTGCTCTTCTGCGAGGCGTCAGAGGGTATCTCGTTAAATTGCCCCTCCACTTTTTAGAAAAAGAAGACCTTAGACCGCCTGTTGGTAGTTCAGAGTTCTTTGTGTCAGAAGGAGTTTTTACGTGA

Transcript

rna-XM_059097446.2

TATAAATACCAATATGTTTCTTGGTCATCGCCGGATATATTTATTGTGTTAATTGTTTCAACGCAGGTCTACCTGATTTAAAAACAGCCGATTTTTCTCTCGCGATTGTGCGTTATTTTAAGGGGGATGATGCAGTGAAATAGATCCTGAAGTCAGAATTCCATTGATGTTACTCCAACTGAACCCTTACTTCCACCCTGTGAAAATCCTGGATAGTGTACTGAATGATACACACTCTTAGCCAGAATGGCCAGTATggtaaatcaaaacaacaagaCATCTTTCTCACATGCAGATAGTAATGTGGCTGCTGAAGAAGACATATCGGTTAAGGTGTCTGATGATGACACTTTAGCAGTACCCaaccaaaataattttgcagACTCTGGCTCAGTGTGTATCGGTGTAGGCAATGAAGAGGATGATGTCTTTGACGGTAGCATGACTTCTATTTTTCAAGATGACAAGAAGGGAGTGTTTCTTCCTGGTCTTAAAGTTACTGCCAAAATCATTGATGTTCAACGTGCACCAAGAGCTCATCCTTTTAACCCTAACTTATACACTATAGAACTAAGGCATGGCAGCTTCACTTGGATCATCAGGCGACGTTACAAGCATTTTGTAAAACTTGATGCAGAACTGTTTTTTCACAAAGTTAATGTTCGCCAACAAAGCATCAGAAGGGATCTTAGAGGTGATCACAGTGGAGAGGGTCATGCTTATCTTCCAAGTCGTCACTTGCCCAAGCGACCAGACATGTTTGCTACAACACCCAATatggaaaaaagaataaagtctCTGGAGAAGTACCTTCAGAGGATTTTGGACAGTCAAAGCTATCGTACTCACAAAGAGACTCTGAATTTTTTGGAGGTCAGCCATCtctcatttcattttgatttagGAGATAAGGGAAGGGAAGGTATTCTCAGAAAGCGGGCAGGAGGTCATCGATTTCCTGCAGGGTGCTGCAGTTGTTGCAGTGGTCTTTCATGGGGAATATGGGACAAAAGGTGGCTTCTTGTAAAAGATAGTTTTATTGCCTATGTCAGTCCCAAGGATAAACAACTAAGAGGAGTAGTGTTAATGGACAAAGAATTTACTTTCAAGTATGGAAGGAAACAGACTGGTGTGCGGAATGGCTTGCTGATCCATAACCAGGCAAGGCAGCTTCTGTTATCCTGTTGGACTGAAAGAAAGGCAAGTGAATGGATGAAATCAATTGTTCATGTTATGGCAACTACTGGTGCTGACTGGATTAAGGAACATCCTCACAGCTCGTATGCTCCAATCAGGGAGAACTGTTATGCTCAGTGGTTTGTCGACGGTGAAGCATATTTTGATGCAGTTGCTGATGCTTTAGAGTCTGCAGAAGAGGAAATTCTCATAACAGGCTGGTGgGTCAGCCCAGAAATATACCTCCGTCGGCCAGTCACTGCCGGCCATGAATGGCGACTGGATATGACGCTGAAGAGAAAAGCGGAGAGTGGTGTAAAAGTTTATGTTCTAATCTACAAAGAAGTTGAGCTGGCTCTAACGCTGAACAGTGCGTACACTAAAACTACTCTGATGGgtttacacccaaacatcaagGTGTTGCGGCATCCAGACCACCTTCCTGGGGCAGGTGTAATATATTGGGCTCATCATGAAAAGTTGGTGGCCATTGACCAGAAGGTGGCCTTTATTGGAGGTCTCGACCTTTGTTTTGGTCGCTGGGACAATCATTTGCACCGTCTGACCGACTTTGGATCTGCAGTTCGGCCTCCAACGCTGAACAAAACGGAGGAACAGATCAGAAAAATTGGCGCTCTGTTTGTAGAAGGAACGCTGGAGGGATTTGACGTCCCGAAATGTTCCGACTTCACAGACAACGTCAAAGTAGAGATAGAACCCGGAACATCAGGAGGAAACAAACTTTGGCTGGGAAAGGATTACTCAAATCCAATCACCAGAGATTTCTTTGACGTCCATAGACCATATGAAGATTCCGTGGACAGAGGCCATGTTCCTCGGATGCCTTGGCATGATGTGGGCATGTGCGTGTTTGGTTTTCCCGCGAGAGACATCGCTCGACATTTCATTCTGAGATGGAATGCTACCAAGattgaaaaggttaaaatgtaTCATGACATCCCTTACCTTCTCCCGAAGTCGTACTCCAAACTTTCTAATGAAAGGCCAGCAACATTAGACGACTTTAACGTGGTGGATTGCCAAATACTCCGTTCCCTCTGTTCGTGGTCAGGCGGTGTTCCTCCAGAAAACTCCATCCATGAGGCATACATAAAGGCGATTGAAGCATCTCAACATTTCATTTACattgagAACCAATTCTTTATCACTTCTCTTTTCATTGACAATGTTAAGAATGAGATTGGACAGAACCTTTTGTGGAGAATAGAGAGAGCACACAGAGAGGgtgaaaatttcaaagttatagTCGTCATGCCACTCCTACCAGCCTTTGAAGgGGAGATTGGTACAGCCACTGGTCGATCGATTGGCGCCATTACTCACTGGAACTACAGGTCAATTTGTCGAGGATCGCATTCTCTCTTGCAGAGATTAACAGAACTTGTTGGTGATCCTTCCAAGTTCATAACATTTTATGGTCTGAGAACTCACTCAGAAATTCATGGAAAACCCgtCACAGAGCTTGTATATGTTCATAGCAAGATGATGATTGTCGATGACAATACAGTAATTATTGGCTCAGCAAACATCAATGACCGCAGCATGCTGGGAAAGAGAGATTCAGAAATAGCCTCTATCATGAAGGACAAGGAATTTGTTCCGTCCGTTATGGATGGCAAGGAATATCAAGCTGGCAAGTTTGCGTTCAACTTAAGATCAAGACTCTTCAGgGAACATCTGGGTTTATTAGATTCTCCTTCAGACGTAGACATCAGAGATGTTGTCTCAAAAAGTTTCTATGAGgatGTGTGGATGGCCACGGCGaagaaaaacactgaaattTACGAGGAGGTGTTTCACTGCATGCCAACAGACCAAGTTCGTTCACTAAGCGACATGGCTGCTTATAAGAGTCTTAAAAACCTCGACAAAGAGGACCCTGGACAGGCACGTGCTCTTCTGCGAGGCGTCAGAGGGTATCTCGTTAAATTGCCCCTCCACTTTTTAGAAAAAGAAGACCTTAGACCGCCTGTTGGTAGTTCAGAGTTCTTTGTGTCAGAAGGAGTTTTTACGTGATTAGATGCATTGTAGGATAGACTGTTTAATCAGTTCCTTTGcgataaaaaattgaattgaaatgatAAGATGCTTTACGATGATAATTACGATTATAATGAGGGGAGGTCGGTGATTACCCACTTCAAGTTACTAAGTCGgataatttaattattttattaaaaatatatcgAATTTAAATTATATGATTGGTTAAATTGACTATCATTTAAGGGAGATCCTACTCTATTGtattttacataatttactCTAGTTTGACATGTCATAATATTTTGGATTGAAACAAGGTACTAGATTGTTTAGAGGTAATTTCTTAAGAAAAACGCTTAGTTTACCTTATTATTTATAAATTGCAAATGGCGCAATAACGGCTTTGAGAGAGGAAATATATTTTGGAAAGCTTATTAAATTACCGTTTGAAATAAATATGAGATTTTGCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015679 all species →	Family	Phospholipase D family	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR016555 all species →	Family	Phospholipase D, eukaryotic type	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0060627 all species →	Biological Process	regulation of vesicle-mediated transport	Interproscan
GO:0006654 all species →	Biological Process	phosphatidic acid biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01115	PLD1_2; phospholipase D1/2	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.