Gene detail

Detailed information of XP_058953628.2 in Pocillopora verrucosa

Genomic Location: chr2:16655977...16663662
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059097645.2

ATGGCGGCTAGGTTGTTAAAGGTTATGCATCCTGAGCTAACAAGGAAAAacgtttctttttcaaatatttggcGGTCATTTGGTACTAAATCCGAATCTGTCGTTTATTCTGAACACGGAGATCCAGAGAAAGTTTTGAGATTAGAGAATGCAGAAACAGGCGAATTTGGTCGCAATTCTGTGTCAGTAAGGATGTTAGCTGCTCCAATAAATCCAGCTGATATCAATCAGATTCAAGGTACTTATCCACTGAAGCCATCCTTACCAGCTGTTGGTGGAAATGAAGGAGTGGGAGAAGTCATAGAGACTGGGAAGGATGTACAGAACCTCAATACAGGAGATCAAGTCATCTTGAGAGCAGATCAGTGTTTAGgttcttgGTGCAGGCACTTAGTGGTGTCAGAGgatcaagttttaaaaattccaaatgGGCTCCCTATGGAAGCTGCTGCCACAGTCAGTGTAAACCCATGCACTGCATTCAGGTTATTGAAGGACTTTGAAGATTTACAACCTGGTGATACAGTGATTCAAAATGGTGCTAACAGCAGTGTGGGGCAGGCTCTCATCCAAATTGCAGCAGCCTGGGGCTTAATTACTGTCAACATAATTCGTAGCAGACCCAATGTGGAGGAGCTGAAAAATCATCTGAAAGACCTTGGAGCTAATTTCGTCATCACCGAAGAGGACTTGAAAAGccctgaaatgaaagaaatcgtTAAGAATATTAAGCGTCCCAAACTTGCCCTCAACTGCGTTGGAGGGAAGAGTTCCATGAGTCTATTTCGTTACTTGGCGCCGAAGGGAACGATGGTCACTTATGGCGGAATGTCGAGACAACCCGTTACTGTACCAACGGGCTCCCTGATATTTGATGACGTAAATGTAAGAGGATTCTGGATGTCCAAGTGGAATGCCGAGCATCAGAAAGATGCTATCAAATTAAACATGGTTGAAGAAGTATGTCAATTGGTACAGAATGGACAGTTAGCGTCCCCTCCTTGCACGAAGCATGCCTTAAAGAATTTCAAGACGGCTATCTCTGAGGCTCTCAGGCCCTACTCTAAAACGAAACAGCTTTTAATAATGACAGAGTAATGGTGAATGTGTTGTTAAAAGACGGTACGCTTCCTCATAGCGGCtcgttttcgagaaatttgaaaagaagactTAACTCTCAAGAACTGAAGGGTTACTCCTTCAACTGACATCAACACGTAAATTTGCCGGCAAGTCATGAGCGTTTTGGATATAAATTCAGGAAAGATAGCTAATTTGTTGTTACCTGTCTGTGAGGCAGCGTATTAAATTTGgtaggaaaattaaaaaaaaactaatcactCAGAGATTGAAAAGCTCAATACATGAGGAAGGTTTTAGCGTGATAATCTTTTAACCAATTACCTCTGGGTAATGGATATGgcaatttttctgcaatttttttggagaaaattaaTCCTGCTATTACTCCAAAATCTGCCGTTTTAAAAATCACTGGTCTCTTGGGAAAGAGACATCATCTGCCCCAGCGAAGGACAAAATAACGACAGAAAGAGATTGATGACAATGTTTGTTGGACTAAaagtcaatttttattttcgaaTTATGGTAAAAAAGTGTTAGTAACCGCACTTTGGTCTGATTTGGAACAACTGGTCGTAGCACAACTGATTTCTTTAACCTTTAACACCTTAGCATCAGTATTCACATTCTCcttactcttctctatacatttcccaagatgctgacaaggagaatttgattaacgaTCAAGAGTTTCTgtagttggtgattatttcctttattctcgtgagcttactgtgtgattcaggggtgatgttgttaggagaaattagatgctaaacTATTCACCCCTGAGGGTCAAAGGGTTTGGTAGGTCGATTTTATCAGGAGCAAGTCAGACGGTTTTTCAGTTCCTCCTCTTTTTCCCAAGTGCCTCCTTCGACTGTACTTTTTAGACTTTACCATAACTGAGTTAATCCTATCCAGGTATGACAATTATGTCCACTTCACAGTGATGTATTGTATGTGCTAGTATGTGCTAACAAATTGTTTGTCCCCAGTTCCGATCACCGTGTACATGCAAGTGTAAATCTGCGATCTATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR020843 all species →	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR051034 all species →	Family	Mitochondrial Enoyl-ACP Reductase	Interproscan
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43981 all species →	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0019166 all species →	Molecular Function	trans-2-enoyl-CoA reductase (NADPH) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07512	MECR, NRBF1; mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase	EC:1.3.1.- EC:1.3.1.38	Fatty acid elongation	ko00062	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.