Gene detail

Detailed information of XP_058953884.2 in Pocillopora verrucosa

Genomic Location: chr9:228445...238378
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131781254

ATGGCGGTCAAATTGGATGATGTTTCTTCTCCTCAACTCGCGCTTAAATTTTCAAGTTCTTCCTTCGATCCTGATAAATATGTCAGGGATCTGTCTGCGAAGTGTGACACTGATGCTGAACTTCAGGATCATCGAAAGCGTATTCAGACTTTAAGCGAAGAAACTGCGGTTAGCTTGAAGAAAAATGTTTATAAGAACTACATGCAGTTCATCGAAACATCAAAGGAAATATCATATCTAGAAGCAGAAATGTATCAGTTGGGACATTTTTTGGCGGAGCAAAAAGCGATACTCAGCAGTCAGGAAGACATGTCTTTATTTGGAACACAAGATCCTAATTCTTCAATGAAACCCTCAAAGAAAGATGAAAAAGGTAGCAGCTCAATAGAATCAGTAGAGGGTCTGGCTAGTGTCCTAGATATCACTGATGTGAACTGTGTTTTTGAGGGAGACCTGGTTGAGGTGGATCCAGAAACATTTCTTCCAAAATCTAAAATTCATGCCTTCCTGTTACATGACAGTATGGTGGTCGCAAACATCATTCAAAACAGGCGTGGTCCAGTTCGTTTTAAGTTCCAAAGCCTGTTTGAACTAGAAAATGTTGCAGTGGTGAATATGACAAGTGCTGATGGTTTGAAGGATGCTTTCAAGGTTTTTCTGTTCCCAGAAACTCATGTGTATCAAGCCGAAAATAAAACAATCAAGAAAGAGTGGTTGGATAGGATTGAAGAATGTAAAAAGAACTTTAAACTGAAGCTGGAACAAGAGGTTAATGAAGGTGGCAGTGAAGTTGCATCCAATACAGAGATTACCAGCAGTTCAGAGAATTCCAATCCTTTTGTTGAAGATAGTGGAAAAAATCCATTCGTAGAGGATGACAACAGCAATCCTTTCTCAAATAATTATGATGATGACAAGAATCCATTTAATGAAAGCAAATCCACTAATCCTTTTGATGAAGAGGAGGATGAAGGGCCTGTTTCTTCTTCCTCACCTAATTCTGGAAACTCCATTGTTGTCAAGGCTGGAAAAGGTTGGCTTAGAGATATGCCAGAAGATTTAGACATGTTCATAGCTCAAAGGGATTTTGAGAGGGCCATGGAGTTAATAGATAGAACGAATAAATATTTGAAAGAAAACAGCAGCTCTCAAGCAGCAAAAGAAATCAAAGTTCGCCTTGATCGTCGAGTAAAGCAGTTGGTAGATGCTCTTATTGATGAGTTGGACTCTAGTCGGAGCTTTCTACTTCATGTAGGACCACGAGCAACCAGAAGAACTGTGTCACTGTTGGTTAGACTGGGGAGAGCTTCTGAGGCATGTCAGCTTTTCTTGAGGAACAGAAGTGAAGCCATCAAACATGCTATAAGGCAACTCAAGATTGAAGGGGCTACATCTCTATACATCTCTAAGTTGTCCACCGCGTTCTTTAGTAGCATCATAGAGACTGGTAAAGAGTTTGAACAAGTTTTCTCTGCTAACAGAGGGTTTAGTTCAGCCTTTGTCGTGTGGGCCAAAAGTGAACTGAAGCACTTTGTGTCACGCTTTTCTAATCAAGTATTCAGAAGGGAGATGGGTTTAGCAGCTACTGGTGTTTGTGTTAGCATGGCAAGGCATCAGTGTGAAAAGCTGCAGGAGATCGGCCTAGACTTGACATTCTCCATGCAAGAGATGCTTCTTAGAGACATTGTTGAAGCACTCCTTGACACAAGAGATCAGATGGTGAAGTTTTCAAGGCACAGGGCCATGGAAACAAATTGGAAACCAATGGAGTTTGAAGGACATGCAGATCAGCTTGGAAAATTATGTGAAGAAATGGAAAGCCTGGGTATTGAGAGTTTTCAACAACTTGTTGATGGCAATAAAGTGAACCTGAGCAGTGCCACTGTGGCTTTTATTAAAGGAGTGTTGGGCTTCGTAGGAGACGGATTAACAGTCAATACACCACAGCTTCAGCCATGGTTCGTAGAATGCATTGGGGATTTGTTTGAAAACCAAGTGGTTCTGTTCGAGGCCATTCTTAAATCTGGTCGGTATGCAAGCCAGCGTGAGTTCATCCTTATGAATGCTTCATTTGTCTTTGAAATTACCCTTCCTCTGATTAAAAAGCGATTGAAGGTTGGGACTAATCCTGGTCGTTTCATGGAAATACAGAGCGAGTTAAAGAGACTTCAGTCCATTACTCCTTCAAGTGATGCGACGGAAGGAAAAACTGGCAAATGA

Transcript

rna-XM_059097901.2

acaaacatggcggtCAAATTGGATGATGTTTCTTCTCCTCAACTCGCGCTTAAATTTTCAAGTTCTTCCTTCGATCCTGATAAATatGTCAGGGATCTGTCTGCGAAGTGTGACACTGATGCTGAACTTCAGGATCATCGAAAGCGTATTCAGACTTTAAGCGAAGAAACTGCGGTTAgcttgaagaaaaatgtttataagAACTACATGCAGTTCATCGAAACATCAAAGGAAATATCATATCTAGAAGCAGAAATGTATCAGTTGGGACATTTTTTGGCGGAGCAAAAAGCGATACTCAGCAGTCAGGAAGACATGTCTTTATTTGGAACACAAGATCCTAATTCTTCAATGAAACCctcaaagaaagatgaaaaaggTAGCAGCTCAATAGAATCAGTAGAGGGTCTGGCtAGTGTCCTAGATATCACTGATGTGAACTGTGTTTTTGAGGGAGACCTGGTTGAGGTGGATCCAGAAACATTTCTtccaaaatctaaaattcaTGCCTTCCTGTTACATGACAGTATGGTGGTCGCAAACATCATTCAAAACAGGCGTGGTCCAGTTCGTTTTAAGTTCCAAAGCCTGTTTGAACTAGAAAATGTTGCAgtggtgaatatgacaagtGCTGATGGTTTGAAGGATGCTTTCAAGGTTTTTCTGTTCCCAGAAACTCATGTGTATCAAGccgaaaataaaacaatcaagAAAGAGTGGTTGGATAGGATTGAAGAATGTAAAAAGAACTTTAAACTGAAGCTGGAACAAGAGGTTAATGAAGGTGGCAGTGAAGTTGCATCCAATACAGAGATTACCAGCAGTTCAGAGAATTCCAATCCTTTTGTTGAAGATAGTGGAAAAAATCCATTCGTAGAGGATGACAACAGCAATCCTTTCtcaaataattatgatgatgacAAGAATCCATTTAATGAAAGCAAATCCACTAATCCTTTTGATGAAGAGGAGGATGAAGGGCCTGTTTCTTCTTCCTCACCTAATTCTGGAAACTCCATTGTTGTCAAGGCTGGAAAAGGTTGGCTTAGAGATATGCCAGAAGATTTAGACATGTTCATAGCTCAAAGGGATTTTGAGAGGGCCATGGAGTTAATAGATAGAACgaataaatatttgaaagaaaacagcaGCTCTCAAGCAGCAAAAGAAATCAAAGTTCGCCTTGATCGTCGAGTAAAGCAGTTGGTAGATGCTCTTATTGATGAGTTGGACTCTAGTCGGAGCTTTCTACTTCATGTAGGACCACGAGCAACCAGAAGAACTGTGTCACTGTTGGTTAGACTGGGGAGAGCTTCTGAGGCATGTCAGCTTTTCTTGAGGAACAGAAGTGAAGCCATCAAACATGCTATAAGgcAACTCAAGATTGAAGGGGCTACATCTCTATACATCTCTAAGTTGTCCACCGCGTTCTTTAGTAGCATCATAGAGACTGGTAAAGAGTTTGAACAAGTTTTCTCTGCTAACAGAGGGTTTAGTTCAGCCTTTGTCGTGTGGGCCAAAAGTGAACTGAAGCACTTTGTGTCACGCTTTTCTAATCAAGTATTCAGAAGGGAGATGGGTTTAGCAGCTACTGGTGTTTGTGTTAGCATGGCAAGGCATCAGTGTGAAAAGCTGCAGGAGATCGGCCTAGACTTGACATTCTCCATGCAAGAGATGCTTCTTAGAGACATTGTTGAAGCACTCCTTGACACAAGAGATCAGATGGTGAAGTTTTCAAGGCACAGGGCCATGgaaacaaattgGAAACCAATGGAGTTTGAAGGACATGCAGATCAGCTTGGAAAATTATGTGAAGAAATGGAAAGCCTGGGTATTGAGAGTTTTCAACAACTTGTTGATGGCAATAAAGTGAACCTGAGCAGTGCCACTGTGGCTTTTATTAAAGGAGTGTTGGGCTTCGTAGGAGACGGATTAACAGTCAATACACCACAGCTTCAGCCATGGTTCGTAGAATGCATTGGGGATTTGTTTGAAAACCAAGTGGTTCTGTTCGAGGCCATTCTTAAATCTGGTCGGTATGCAAGCCAGcgtGAGTTCATCCTTATGAATGCTTcatttgtctttgaaattacCCTTCCTCTGATTAAAAAGCGATTGAAGGTTGGGACTAATCCTGGTCGTTTCATGGAAATACAGAGCGAGTTAAAGAGACTTCAGTCCATTACTCCTTCAAGTGATGCGACGGAAGGAAAAACTGGCAAATGAAAATGTGACAACATCTCACCACTAATGAtaaattgttttcaagaagacacttcATTATAGTCTGTTCAAAAcagaactgaaaacaaaataacagaaGTAACCAAATGAGAACTTCAATTTTCTTGTATCTTACAGAAACAAATCTTTATTTCTAGTGAATTCAGTCTGATAATGATGTACAATTATTGTTTCGATACCGAGAAAAGTTCAGTTATCATTGGATGAGAAGTAACAGTTGTCCTACGCTCCATGCGCTAATGGGTGAGGCTGCAGTCGAGCCTTTCGTCCGCCTATGATCGTTGTTGAGTGGTGGGGGAATCTTTTATCTGTTTCCCTTGGATGGAAAATTCTTGTGAcgttttcaatttaatttagtGCAGAGAGAGCAGTAAAATTACCCTGACTGGTCTTAATAACGCGCTCATTGGAATGAAAGAGTTAAATTGTGATATTATCCTTGTCACCCTTGCAAAAAGGGCTCTACattctttgtttcttctttATCTGCGAAAGAGAAAAATTCACCACATTCGTTTTGCATAGTAATGCAGTGACGGTTACGCTGCCAATATTCGAGTTTTGTGCAAAAAAACACTTTGAGTCCTCAAGTCGTGGCTATAAGGGTTAAATAGACTCAGAGAATGAATTTGGAAACCAAAGTACCTTTCCTTATTAGTAGATTTTTAACCACGAAAaccaatttggttttttttttttttataaaatctTCAACTGTAGTGGAGTCGACCCACTCTTTAATTAGTACTGAACGTTACaacgaaaaaataaatgaattacaCGAGAGAGAGAGAAGCTTTATGGTTGTTTTGGCGTTAATTAGCATTAAATGAAGACTTCGTTAGGCTGGATCACGAAAATACTTGTGTGTTTCACCAGAAGCCCCGAAAAAAAACTGCAGGGAATTGTTTCTTTGTGAGTCTAAGCAATCACGCGCCTTTGTATCCGTAAACAATAACGCTAGCATTAGCACGTTACACAAACAATGCCAAACAAATGTACGGGCGGATGTGATATTAACTCCATTCTTATACAAACAGAACACTGGAACAGACTTGTATTACTTCGAATAGTTAGTTCAGTATTTCTTGTCACGTTTATCACGAAATGTAACATGAACCTCGCTTTTTTACAGCTCTGAGCTACTTGGAATTGCTTGTTTTTGGTTTCACGTTGTGGTCAGTCTTGTCTTTTAACGGTGAGATTACAGGTACTCGGTCAAAAAAGAGTGGGAATGGATCCTAGGGGATTTAAGAAGAataaacctttcttttttaaggtttAGCAAGTTGTTGTGACAATTATTCAAAAATGCTAAATAAATTATAAGGGCGCTAATTATATGAATAAGTGGACAAACATGTCAACCGGAATAAGCTCTAGAAGTCTGCAATGCTTGTgaattt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08700 all species →	VPS51_Exo84_N	Vps51/EXO84/COG1 N-terminal	Repeat	Interproscan
PF16528 all species →	Exo84_C	Exocyst component 84 C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042561 all species →	Homologous_superfamily	Exocyst component Exo84, C-terminal, subdomain 1	Interproscan
IPR042560 all species →	Homologous_superfamily	Exocyst component Exo84, C-terminal, subdomain 2	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR032403 all species →	Domain	Exocyst component Exo84, C-terminal	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR033961 all species →	Family	Exocyst complex component Exo84	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21426 all species →	EXOCYST COMPLEX COMPONENT 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19986	EXOC8, SEC84; exocyst complex component 8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.