Gene detail

Detailed information of XP_058953960.2 in Pocillopora verrucosa

Genomic Location: chr1:1940511...1952482
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131781320

ATGGCGGCGAATTTGAAGTCACAAGATGAAAGGGCAGCAAGACCTCTTTGCAACGATAGAAGCTGCGATCTCTGCAATACGCATTTGTCAAGGTTACCTAAGAGTTTAGGATATGGAATTATTGCTTTTACCTCGTTAGCTTGTTATCTGAACAGCTTGGATTACGATTTAGTACACGATGACATTTTTGCGATCAAAGAGAACATGGACATTCGCCCTGAAACTCCACTGCTGAACATACTCTCTAACGACTTCTGGGGCAAGCCAATGTGGAGTAATACGAGCCATAAGTCGTACAGACCGCTTTGTGTCTTAACTTTTAGAATAAATTTCGCAATACATGGCTTAAAACCTTTTGGATACCATGCTGTCAATGTTGTTCTTCACGGATTGGTTTGTCTGTTGTATACTTATATGTGCGAAGTAGCGGCCTTCAAGTCCAGTGTGCTTGCATTTATTGCGGGAATGTTATTTGCTACACATCCTGTCCATACAGAAGCTGTGACAGGAGTTGTGGGACGCGCTGATGTACTGGCATGTTTGTTGTTCCTACTTTCATTTCTAGCATTTGTAAGGTCTGTAGGAAACAAAGGCTGTTGCCAGATAATGTACACAATTATTTACATGGTTCTTGGTGCCATTGCTATGCTGGTAAAGGAGCATGGCATAACTGTGTTTGGTGTATGCTTTGTATATGATTGTATGGTTATTAACAAGAATTTGATTTGGAGAGTCATCAAAGAAAGAACTGTGTCAATGGAAAAGGACGTTACGGCATTGAAGCGTCTTCTATTACGAACACTTGTTCTCTCTGTATCTGTTTTTTGTCTCATGGCATTCAGAGTATGGATGCTTGGAGGAAATCTGCCACATTTTACAATTCAGGACAACCCTGCCTCATTTTCAGATTCTCTCAGTACCCGTGTTATGACTTACTCATATCTGATTGCGTTCAACTCTTGGCTGCTTTTGTCGCCAAGTGTGTTGAGCTATGATTGGCAGATGGGAAGCATACCTCTTGTGGAATCGCCGCTGGATTCCCGAAACTTAGGCACACTGATGTTTGCCATGATAGCTGTTCTTCTGGTTTATTTTGCTGTGTTCTCCAATGATACCCTGCCACGTGATCAAGATGTCCTCGTTTTGTCTCTGGCCATATTGGCTATTCCATTCCTTCCGGCTTCTAACCTATTCTTCAGAGTTGGATTTGTTGTTGCTGAAAGAATACTTTACATACCAAGCATGGGGTTTTGTATGCTTGTTGTTTGTGGACTCAACAAACTGGCATCGGTAGTGACACCAAATGGTAAAGTGGCATTCAAAGATAAATTTACAGAAGCACGAATGAATGTCCTGCAAAAATTCTTACTATCAGGGGTATTTGTGATGGTGGGACTTTTCTGCTGGAAAACTGTGGTACGGAATCGTGTATGGAGCAATAGGGAGACGCTATTTAGGTCGGGAATTGAAACTCTTCCTCATAATGCTAAAGCACATTACAACTTTGCAAATTTTCTAAAAGATACTGGAAGGGCTAAAGAGGCCATATATCACTATGAAACTGCGCTAAAGTTGGCACCAAATCATGTCAGCGCTCATAACAATCTGGGTACCCTTTTGGAAAACGATCAGGAAGCCATGCAGCACTTTTCTGAAGCCATCAAGAATGATCCATATCATGCAAACTCGTACTTCAATCTTGGAACTCGCTTGGCGTCATTAAAGCGTCTCTCTGAAGCCGAAGCAATGCTTAAAAAGGCCATCAGGTTTAATCCAAGTTATTTAGATGCAGTGTTAAACGTGGCTGGTGTGCTCATTGAACAAGAGAAATTTGATGAAGCTGAGGAGTTTTACAAGAAAGCGCTGACTTTAGAGCCCAGAAACGGCGATGCTTACAACAATTATGCCGTATATCTTGGAAAAATTGGTCGGACAAAAGAAGCCTGGGAGAATTACAACAAAGCTCTACAGCTCAACCCTACTCACGCAGTGGCGATGGTGAACATGGCTCGGCAGTTACGTGCAGAAGGAAAAATTCGGGATGCAGAAATAACTTACAAGAGAGCTCTGTCAATACGACGAGACCCAATTACGTTACAGTTGCTTGGAGTACTGTATTATCACAACCAGCAGCTAAAAGAAGCAGAACTGGCTTGGAAAGAATCAATAGAACTGGAACCAACGAATATTGAAACTCGCTCGAACTATGCAATTCTTCTCGGACAAACCAACCGGCTCGATCAGGCCATGGGTATTATGATGGGCCTGGTGCAAGACGATCCTAATAATCCAGGACACTACAAGACACTAGCAGGAATGTATGCTCAGAACAGACAATTGGATGAAGCTCTGCAAGTAGTCACTAACGCTCTCAGGCGCCATGTCGAAAATGCAGAACTTTATTATTATCAGGGAAATTTTTTCAAGGATTTAAACAACATGCAACAAGCCAAGAAGAGCTACAAGAAAGCTGTCCAGCTGGACCCACAACTTTTCAGTGCTCATTTGAATCTTGGAGTCATATTCCACCTTGAGGGAAATCGAGCAGAGGCCAGGCTTCATTATGAGATCGCAGCGAAGCTGGATCCAGGCAATACAATCTTGAAGGAGAATCTGGCGAAGCTGCAACGACTAGAGAAGAAACATAGGCAGTGA

Transcript

rna-XM_059097977.2

ttcaatatggcggcgaatTTGAAGTCACAAGATGAAAGGGCAGCAAGACCTCTTTGCAACGATAGAAGCTGCGATCTCTGCAATACGCATTTGTCAAGGTTACCTAAGAGTTTAGGATATGGAATTATTGCTTTTACCTCGTTAGCTTGTTATCTGAACAGCTTGGATTACGATTTAGTACACGATGACATTTTTGCGATCAAAGAGAACATGGACATTCGCCCTGAAACTCCACTGCTGAACATACTCTCTAACGACTTCTGGGGCAAGCCAATGTGGAGTAATACGAGCCATAAGTCGTACAGACCGCTTTGTGTCTTAACTTTTAGAATAAATTTCGCAATACATGGCTTAAAACCTTTTGGATACCATGCTGTCAATGTTGTTCTTCACGGATTGGTTTGTCTGTTGTATACTTATATGTGCGAAGTAGCGGCCTTCAAGTCCAGTGTGCTTGCATTTATTGCGGGAATGTTATTTGCTACACATCCTGTCCATACAGAAGCTGTGACAGGAGTTGTGGGACGCGCTGATGTACTGGCATGTTTGTTGTTCCTACTTTCATTTCTAGCATTTGTAAgGTCTGTAGGAAACAAAGGCTGTTGCCAGATAATGTACACAATTATTTACATGGTTCTTGGTGCCATTGCTATGCTGGTAAAGGAGCATGGCATAACTGTGTTTGGTGTATGCTTTGTATATGATTGTATGGTTATTAACAAGAATTTGATTTGGAGAGTCATCAAAGAAAGAACTGTGTCAATGGAAAAGGACGTTACGGCATTGAAGCGTCTTCTATTACGAACACTTGTTCTCTCTGTATCTGTTTTTTGTCTCATGGCATTCAGAGTATGGATGCTTGGAGGAAATCTGCCACATTTTACAATTCAGGACAACCCTGCCTCATTTTCAGATTCTCTCAGTACCCGTGTTATGACTTACTCATATCTGATTGCGTTCAACTCTTGGCTGCTTTTGTCGCCAAGTGTGTTGAGCTATGATTGGCAGATGGGAAGCATACCTCTTGTGGAATCGCCGCTGGATTCCCGAAACTTAGGCACACTGATGTTTGCCATGATAGCTGTTCTTCTGGTTTATTTTGCTGTGTTCTCCAATGATACCCTGCCACGTGATCAAGATGTCCTCGTTTTGTCTCTGGCCATATTGGCTATTCCATTCCTTCCGGCTTCTAACCTATTCTTCAGAGTTGGATTTGTTGTTGCTGAAAGAATACTTTACATACCAAGCATGGGGTTTTGTATGCTTGTTGTTTGTGGACTCAACAAACTGGCATCGGTAGTGACACCAAATGGTAAAGTGGCATTCAAAGATAAATTTACAGAAGCACGAATGAATGTCCTGCAAAAATTCTTACTATCAGGGGTATTTGTGATGGTGGGACTTTTCTGCTGGAAAACTGTGGTACGGAATCGTGTATGGAGCAATAGGGAGACGCTATTTAGgtcggGAATTGAAACTCTTCCTCATAATGCTAAAGCACATTACAACTTTGCAAATTTTCTAAAAGATACTGGAAGGGCTAAAGAGGCCATATATCACTATGAAACTGCGCTAAAGTTGGCACCAAATCATGTCAGCGCTCATAACAATCTGGGTACCCTTTTGGAAAACGATCAGGAAGCCATGCAGCACTTTTCTGAAGCCATCAAGAATGATCCATATCATGCAAACTCGTACTTCAATCTTGGAACTCGCTTGGCgtcattAAAGCGTCTCTCTGAAGCCGAAGCAATGCTTAAAAAGGCCATCAGGTTTAATCCAAGTTATTTAGATGCAGTGTTAAACGTGGCTGGTGTGCTCATTGAACAAGAGAAATTTGATGAAGCTGAGGAGTTTTACAAGAAAGCGCTGACTTTAGAGCCCAGAAACGGCGATGCTTACAACAATTATGCCGTATATCTTGGAAAAATTGGTCGGACAAAAGAAGCCTGGGAGAATTACAACAAAGCTCTACAGCTCAACCCTACTCACGCAGTGGCGATGGTGAACATGGCTCGGCAGTTACGTGCAGAAGGAAAAATTCGGGATGCAGAAATAACTTACAAGAGAGCTCTGTCAATACGACGAGACCCAATTACGTTACAGTTGCTTGGAGTACTGTATTATCACAACCAGCAGCTAAAAGAAGCAGAACTGGCTTGGAAAGAATCAATAGAACTGGAACCAACGAATATTGAAACTCGCTCGAACTATGCAATTCTTCTCGGACAAACCAACCGGCTCGATCAGGCCATGGGTATTATGATGGGCCTGGTGCAAGACGATCCTAATAATCCAGGACACTACAAGACACTAGCAGGAATGTATGCTCAGAACAGACAATTGGATGAAGCTCTGCAAGTAGTCACTAACGCTCTCAGGCGCCATGTCGAAAATGCAGAACTTTATTATTATCAGGGaaattttttcaaggatttAAACAACATGCAACAAGCCAAGAAGAGCTACAAGAAAGCTGTCCAGCTGGACCCACAACTTTTCAGTGCTCATTTGAATCTTGGAGTCATATTCCACCTTGAGGGAAATCGAGCAGAGGCCAGGCTTCATTATGAGATCGCAGCGAAGCTGGATCCAGGCAATACAATCTTGAAGGAGAATCTGGCGAAGCTGCAACGACTAGAGAAGAAACATAGGCAGTGACTACGGACTGTTGTATTGAGGGTGTATGTATAAATCAACTCCCTacaattttcctttgaaacGAAATATGCAAAAAGTGGAAACTGAAGAACTGAACATTCACACGCCTGTCATTTAAGAGAAAATGcttcttgttttaaatttacgTGTTTCTAGACTTTCTATTGCTCGATTCAGCGTTTCGTTTCCCTAAACTCGGAGAGTACTCAAATTGCAACGTTTATGATGGCGGAATTTTGTGGTTCAGGGAAAAATCTGCTCCATAAGGGCCCGCTTATGAGAACCAATGAACATTACAGCTACGAACCATGTAAATCGTGTAATGTCTTATCTCGCTTTTTTCTCGCAACAATCCATAATTAGTGGGATTTTCAAAACCAAATCCACTGATTTGGAACGCTAttcatttccttcttcattgACAAGGCATGTCTATTTGTGCAAAGTAAAGTAGCCTTAGCAGTGGATCTGGAGGACAATTTGAACTCAAGTATAAAAGCGCTGGTTGCTAACGGTTATAACAACTTTTGCGCCAAAGAAGATTCAATTTCATTACATTTTGTGCTACTTTCGAGCATATATTTGGGTTTTATTCCTTTCGCCCCCTAGGGATTAAGCGAAAACTTAAAATACTTTGGATTCTTGGATAACGTTTTGAACCTGTTAatctgtgaaagtttgaaagaaatcggtgagatggcatgtgaTACAAATGGCTTGGTTCTCTCGTGGACAGACACTTAATGGGTGGCTTATCCATCAAAGTTTAATTACTGGAGTTATTTCCAAAAGAACAATTGCTGAACAGGTTCAACAACTGTTACTGGATGTCTGAAACATACCATTTAGTAAAAACCCTATTAGTGCCAGAAAAGTGGATAAGTACTTTACATAACTACCAAACTTAGAGAAATTGCTGTGATGAACAAGAACTGCCATAATTTTGATGGATCTCAACGTTAAGTTCAGGTTTAATTCAGACGCTGTTTTTAATTAAAGGAACAATTGCCATTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052943 all species →	Family	TMTC O-mannosyl-transferase	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44809 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.