Gene detail

Detailed information of XP_058954530.2 in Pocillopora verrucosa

Genomic Location: chr7:20169652...20178279
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059098547.2

GTCAACTGCGGAACACAGTCTCAAGAAGATGGCTACTGTCGAAGGGGAGTTCATTTTCGATGCCGTTGGCGGCTTTTTAACTTCACCAATATGGAATTATCCAGTGCGTACTTTCATAGAACAAAATTCGCTTGTATTTGATCCTGACGGCGAAAACCACGAAGCATATCAGGAAATACACAAAAAGTACAAGGAAATGGTGGACACTTTGTTATCAAGCTTTATAAAAGATGTAGGAATATCAGAAGAACAGTTCATGAAAGCTTGTCAGGAAGGAAGAAGCAGTCCACAGTTCAATTCTATAAACAGGGATGTCTTTGATCACATGTGGGCTGCTGAAGACTATGAGGTATTCAAGCGACTGATGATTCAGAAAAATATTGAGCTTCAACTACAGGCTCTGCAGCTTCTCCAGCAAGTTCATAATGTCCAAATGCCCATGCCAATACCTATGCAAAATCAAATACCGATGCCTGTTTCTGTGGCTCCACCCAAGTCAGTTCCTATGGCTCCATCCAGTTCTGTTCCTCCACCTCCAGGTGCAGATGAAGATGCTATCATGCAGGAGGTTTTGAGGAGATCTAAGGAAGAGTTTGAGTCTAAACAAAAAGATGCCAAGGCTAAAACAGAGCAAGAATTTGAAAGGACTTTGGCAGAATCTACAGAAGAAAGTAAAAGgctAACCGAAATAGCCAAAAGAGAGCAAGATGAGCTAGAAAAAGCACTTCAGATATCATTGGAGGCACAAAAGATGCAGACAGCCGAGGTGGAGAAATTGCGGGACGAAGTGAAAAAATCAACATCAAAAGGTTTTCCTCAGCCCACCTCTGCTGAGGCCAAACCTGCTCCCAAGCCCTCCCCTGCAGAAAGTAAAGCGGCGACTAAAGCCCCTCCTGCTGCGAGTAAGACAGCACCTAAACCCTCCCCTGTGAAATCTAAGTCCCCCACTCAGCCTAAAAGTCAGGCTTCTGGGTTACCGCCCCTGTCAGTAAAGACAAAGAAAGCAGATACACCAGTTAATGCAGCAGAAGGATGGTTAAAAAGCGCCAAGGAGGACGCTGCTAACAATGCCAGTGTCACGCCAACGCAGTCAAAGGAGGTAAGCGAAGAGGAGATGAAAAGACGAGCTGCCTATCTTAAACAACAGCGAGACAAGCTCATGGACCTGAAGAGGCAAGAACGCGAGAAAAACTTGACGAAGTACACCGAACAACAGCCGAAGGCCCGGCCGACATCTTCCCGAGCAGCACGTCAGGTCACAGCAGGAGAGCAGGTCCCTTCACCGGCTGCAAAGAGCGACAAAGATGGAGAAAAGAAACTAGCGATGCGGCGAGCTCTTGCGGACGTTTTGAAGCGAGAAGTCGTcgataaaaattaattactgGCAAATTAACTGTTGGTTCCAGTCGGGGCTGGTCAATGTGAAGGTTACTGTTAATGGAAAGTTAGTTAAAGTTAACTAATTGTTATGCACACTACGTCAGGCGGAAAAATTCACTTAAGGCATATTCTTTTTAAGTGCACGAACAGCGAATTCTCTTTTTCGACCAAGCAGATAGCGAGTATGGCCTCCAAGGTGGCACTGAAATTTGCGGATAAAACTTTTGGGTACTCAAGTGATCACGACGGTGAATAATGTCGCTGTAGGAGTGTCCTGCTAGTTCTACTCCCGCCGGGCACAACATTTGAGATCAGTGCTAAGTTACTTTAGAAGCGTGCGATGGTGATAATGATAAATTAGCCCACGTAGTTTCTCTGTTCTGTTTAAAGTACGCTAAATTTGGGTGATTTCCTGTTCGTTTTTCCGCGAAAGAAGGTTGGAAATGTTACCAAATTTTGTCCGCAAATGACAGTTTGGAAATATcataaagtttttcttttgttttgtcacttTCTTGTCGTTGGTGCTGTCGTTTTTTGCTAAAATGACGTTGAGATCCACATTCGAAGTGACTAAATCGTTAGAAAAACGTCCATTCTTCATTGCTACTGTATTTTACCACCATGTAATCTCGACTTATGTCACGATGTGTTTCTTGTACGATCCTTGGGTAAGGACCGTGgggaaatatattttgagttgGGAGACATTTTAAAGCTACAGCAagctttgttttgtattgttgaTGTCTTCAATTTCACAggcaggaaatttttttcaagaaaacttcTTGCGAGAGTTTTTTCTTGGGCTAAAGTTAATATAAGAAGTTCAAtgcaataatttatttctatggTTATTCGGCATACTTCACAATTTTTCcccttctgttttattttcttatcgTTTTAGGCAAAATTTCTGTTAATCCTGTTGTTGTGATCTAAAATACACTTTTTTCCAGATCAGAATCGCTAAATATGAAATAGAGAGTCCCTATGTTCGCAATGATGCTACTGAAAGGAATATCCTCTCCCTTAAATTTTGTTACTACAGTAGTATGTCAGCAGATCAATTCAGACTCATAATTACAATAATCCCAGCTAGAAACTGACAGAGTCAAAAATCCTTCTCATGTTCGAAAAATCATCTAAAGAATTTCATGTCGTAAAGTGGATTTTTCAGAACTTATTTAAgacttaaaaaatgtttgaaaatgaataaagtGCGTGGAGAAGTCTTAAAATTGAGTGACTTATAAGTCACATGCTATAACAATTCTAAGTCAGAAATTACGATAGGTTTTGAActgaaatttgaatgaattttcCTTCAGTAGCTAAACGCTTTAACTCCTacaagtgataaacatgtaataTATCTTTACATTATCCTTACATTGTCCTGTAGACTTACCAGgttaaagttgttttcttgatctaacattaAATtatcgtaactaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11527 all species →	ARL2_Bind_BART	The ARF-like 2 binding protein BART	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042541 all species →	Homologous_superfamily	BART domain superfamily	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR023379 all species →	Domain	BART domain	Interproscan
IPR038888 all species →	Family	Cilia- and flagella-associated protein 36	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21532 all species →	PHOSPHODIESTERASE HL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0097546 all species →	Cellular Component	ciliary base	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25395	CFAP36; cilia- and flagella-associated protein 36	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.