Gene detail

Detailed information of XP_058956435.2 in Pocillopora verrucosa

Genomic Location: chr11:6908053...6918024
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131783690

ATGTTCCACAGAATGAAGTGCCGAGCGAACGATTTTTGTCTTCGACGAATGGGTTTACATAGACTACTTGAACGCGCTCTTTCTTCAAATGGTTGTTTTACAAGCAGGAATCGAGAAAATCACTCAATGTGCTGCTTCGAAAAGAATAGATGGAAATATCTTGTAAATTTACAGAAAAGATCCCTGCAAGACGGAAGGACAAAGGGTGACAATATTATTCTTATGGGAAGTCCTGGTGCAGGAAAAACTTCTGTTGGAAGAATCCTTGGGAGACATTTGCAGAGGGAAGTTCTTGATATTGATGATGATGTCTTGGAGAAGGTGTGGGGAATGACAGTTGCAGAAAAGTTGTCTCAAGTGGGCTCTGATGGTTTTGTTGAAGCAGAGGGGCAAGCATTGTTGCAGTTCTTTCCCAACAATGCTGTTGTGTCTTTGAGTGGGTCCAATCCAATGCATGCAACAGCCATGGATCACACCAGATCACTTGGGACTGTTGTGTACTTAGATGTGGCAGATGAAGAGATATTGAATCGTCTGGCTGCTATGAAAGTAAACAGGATTGTTGGACAGAATGAAGGTATTAGTATGAATGAAATTCTTCAGTATCGTAAACAGTTTTACGAATCTAGCTATGACGTTCGTGTCATCTGTGCCAATGGAGACTCCATCGAAGAAATTGCCAGCAAAGTTCGGACAAGTTTGGCAGAGTTAAGCATCGATCAGGGATTTACAAGCACAAGACAGGAACACTCTGACACTGGTGACAGTCCAGGATTTTTACGAGTGGTGTTAGAAGGACTGGCGCCCGACGGAGGACTATACGTACCCAAGAAAAAGATACCACACTTTACTGAAGGTCAATGGGAAAGGCTTGTAGACTGTAGCTACCAAGACAGAGCTTTGCGAATTCTAGAAACATGGATTTCACCAAGCGAACTTCATCCGTCAAGTTTGCGCCAAATGGTTTACAAGGCTTACTCCAGTAATTTCCAACACGAAGGAGTTGCCCCAGTTGTCAAACTTAACGAGCAGTTCTATCTACAAGAACTATTCCATGGACCTACCGCCTCTTTTAAGGACATGGCTTTGCAGTTGACACCGCAGTTTTTTAGCGAAGCTATCTCTCGAACGTGTTCCTCTGATGAGGATCTTAAACGTCTCATTCTCGTTGCCACATCAGGAGACACGGGTAGCGCGGTGCTGGAGGGTTTTAAAGAGAACTTTGATACTGATGTCCTCATTCTCTACCCAGAGGAAGGTGTCAGTTCGATCCAAAAGGCGCTGATGGTTTCGTCTGATGGTCAAAATATGCGCGTGATCGGAGTGAAAAGCGACTTCGACTTCTGCCAAACTGCAATTAAGACAATCTTTAACAATATGTCGTTTAGCAAGAAACTAGCAGAGTCGTATGGTGTACAACTGAGTGCGGCGAACTCTATAAACTGGGGAAGATTATTACCACAAGTTGTTTATCATGCCTCGGCATATTTGGATCTTGTTCAATCTGGAGTTATCTCCATGGGCGAGGAGGCAGATTTGTGTGTACCAACAGGAAACTTTGGCAATATTCTGGCTGCCTACTATGCAAAGGAAATGGGAATACCTCTCAATAATCTGATCTGCGCTTCCAACGAAAATAACATTCTTACAGACTTCTTTCACTCTGGTTCTTACGACATGAGTAAACGAAGGATTCAACAGACCCTTTCTCCATCTATCGACATTCTCAAGTCGTCCAACTTGGAAAGATTACTTTATCATGTTACTGGACGAGAAGTGTCTGGGTTGATGAAGTCGTTGGATGAAAATAAGCATTTTCAGATTTCTGGTGATCTTTGGAGCCACTTGTCAACTGTATTTAAAGCGGATTGGACTACAGAAAAGAGGTGTCTGGATGTGATAAAATCGACCTATGAAGAAAGTAACTACATCTTTGATCCTCACACAGCAGTGGCTAAAGACGTAGCGGATCGCTTTGCAAATCCTCATCGACCCCTTATCATCTCTTCAACTGCCCACTATAGCAAGTTTGCGTACGATGTTCTAAAAGGACTGTCAAAATTACCAGCATCCCAAGGTCCTTTGGACTTGTTTGGGAGTCTAAACAAACTTGGTGCCAACCCTTCTGCGCATGCCAATCTTGAAACTGTTGTCAAGCGAGATCAAAAGCAGAATACCACGTGCTTAGCGGAAACTAGTGTAATCATTAAGGAAATAGAAGCCTTTTTAAGTCGATGA

Transcript

rna-XM_059100452.2

CACACGATGTGAGCTGTTACGTTCGCGTGACTCTTGAGTGACTTGATTTTCACTTTTTCGATGCGTTATAGCAAGATTTAACTCTAAGATTTTATTCCCCATCAGCAAAATGTTCCACAGAATGAAGTGCCGAGCGAACGATTTTTGTCTTCGACGAATGGGTTTACATAGACTACTTGAACGCGCTCTTTCTTCAAATGGTTGTTTTACAAGCAGGAATCGAGAAAATCACTCAATGTGCTGCTTCGAAAAGAATAGATGGAAATATCTTGTAAATTTACAGAAAAGATCCCTGCAAGACGGAAGgacaaagGGTGACAATATTATTCTTATGGGAAGTCCTGGTGCAGGAAAAACTTCTGTTGGAAGAATCCTTGGGAGACATTTGCAGAGGGAAGTTCttgatattgatgatgatgtCTTGGAGAAGGTGTGGGGAATGACAGTTGCAGAAAAGTTGTCTCAAGTGGGCTCTGATGGTTTTGTTGAAGCAGAGGGGCAAGCATTGTTGCAGTTCTTTCCCAACAATGCTGTTGTGTCTTTGAGTGGGTCCAATCCAATGCATGCAACAGCCATGGATCACACCAGATCACTTGGGACTGTTGTGTACTTAGATGTGGCAGATGAAGAGATATTGAATCGTCTGGCTGCTATGAAAGTAAACAGGATTGTTGGACAGAATGAAGGTATTAGTATGAATGAAATTCTTCAGTATCGTAAACAGTTTTACGAATCTAGCTATGACGTTCGTGTCATCTGTGCCAATGGAGACTCCATCGAAGAAATTGCCAGCAAAGTTCGGACAAGTTTGGCAGAGTTAAGCATCGATCAGGGATTTACAAGCACAAGACAGGAACACTCTGACACTGGTGACAGTCCAGGATTTTTACGAGTGGTGTTAGAAGGACTGGCGCCCGACGGAGGACTATACGTACCCAAGAAAAAGATACCACACTTTACTGAAGGTCAATGGGAAAGGCTTGTAGACTGTAGCTACCAAGACAGAGCTTTGCGAATTCTAGAAACATGGATTTCACCAAGCGAACTTCATCCGTCAAGTTTGCGCCAAATGGTTTACAAGGCTTACTCCAGTAATTTCCAACACGAAGGAGTTGCCCCAGTTGTCAAACTTAACGAGCAGTTCTATCTACAAGAACTATTCCATGGACCTACCGCCTCTTTTAAGGACATGGCTTTGCAGTTGACACCGCAGTTTTTTAGCGAAGCTATCTCTCGAACGTGTTCCTCTGATGAGGATCTTAAACGTCTCATTCTCGTTGCCACATCAGGAGACACGGGTAGCGCGGTGCTGGAGGGTTTTAAAGAGAACTTTGATACTGATGTCCTCATTCTCTACCCAGAGGAAGGTGTCAGTTCGATCCAAAAGGCGCTGATGGTTTCGTCTGATGGTCAAAATATGCGCGTGATCGGAGTGAAAAGCGACTTCGACTTCTGCCAAACTGCAATTAAGACAATCTTTAACAATATGTCGTTTAGCAAGAAACTAGCAGAGTCGTATGGTGTACAACTGAGTGCGGCGAACTCTATAAACTGGGGAAGATTATTACCACAAGTTGTTTATCATGCCTCGGCATATTTGGATCTTGTTCAATCTGGAGTTATCTCCATGGGCGAGGAGGCAGATTTGTGTGTACCAACAGGAAACTTTGGCAATATTCTGGCTGCCTACTATGCAAAGGAAATGGGAATACCTCTCAATAATCTGATCTGCGCTTCCAACGAAAATAACATTCTTACAGACTTCTTTCACTCTGGTTCTTACGACATGAGTAAACGAAGGATTCAACAGACCCTTTCTCCATCTATCGACATTCTCAAGTCGTCCAACTTGGAAAGATTACTTTATCATGTTACTGGACGAGAAGTGTCTGGGTTGATGAAGTCGTTGGATGAAAATAAGCATTTTCAGATTTCTGGTGATCTTTGGAGCCACTTGTCAACTGTATTTAAAGCGGATTGGACTACAGAAAAGAGGTGTCTGGATGTGATAAAATCGACCTATGAAGAAAGTAACTACATCTTTGATCCTCACACAGCAGTGGCTAAAGACGTAGCGGATCGCTTTGCAAATCCTCATCGACCCCTTATCATCTCTTCAACTGCCCACTATAGCAAGTTTGCGTACGATGTTCTAAAAGGACTGTCAAAATTACCAGCATCCCAAGGTCCTTTGGACTTGTTTGGGAGTCTAAACAAACTTGGTGCCAACCCTTCTGCGCATGCCAATCTTGAAACTGTTGTCAAGCGAGATCAAAAGCAGAATACCACGTGCTTAGCGGAAACTAGTGTAATCATTAAGGAAATAGAAGCCTTTTTAAGTCGATGATTGTGGACGGGGATTTTAGCGACTGATAACTCGAACCTTCAAGGGAAATCGAAAAATGTTGGAGGCCTTGCgagttgaaaacaaaggacCGAAAACAAGGGAAAACGGTGTTTGCTGTTTTTCTATTCGTGCAATAtactttttaatcaaatttaattcTAGAGAAGTCGAGTGAAAATGGAACATTAAATTACTGCAGAAATCGTGACACAACGTAAATGTTTTGGACTGCagtaaactgtttttttctgaTTTGTCACCTGTTGCCACAATAAATGATccgaaggaaaataaaaattgcttcGAGTTAGCGGGAGGTTCGAGATACGAAGGGTGAAATTGCACGTAAAGCTGGGGATAACCGATTTTCACTCAGCTTCGCCTCGTGAGTCCACATCATTTTGACCACGTGATGACGTGATGACGtgtcgataagagtacaaaCTACGCTAAACGTCATGActtcaaacaaatattttctctcCTAGCGGCTAATATATCGTGGACGTCATTTTGTTTCGTCACGTCACGCGTAAGATTGAGAAATAATCTTCCAAAACGTGTTCAGGCTTTCTACGAAGTGCGCaggaactgaaaatgaaatcgaGTCCGGCGTACGTATGAACCCGTTACTGGTAAATTATACTCATTCCATTCCACTCAAAACAAGTAATTGGCTAATCTAGTACCCAGCCTAGTGATTGGCtgtcaaacaaatattttcgaTGGCATATCATCAACTGTACGATTTTTCGTTAGCACTTACGGAGGTGAAAATGGCAGGCTACTAACCAGCCTTCATCGGCGGTGCATCAACCTCGTTCTCAGGGTCCTCTCGCTTCTTCACTCGAGAGGGAAGATTGAAGTTGACCATGCGTCTCACTTAAGAGTCACGTGATGCTATTCGCGTCAGATCACGTGCGCAAGCATTATAAATAGTTCAAGCAACACGATTCATTGCATTTGTTTTCCACAAATTCTGGCCTTCTCGACTCCAAGCGGAAGACAACATCGGGCTAAATGATGTCTCTTTTCCTCAAAAAGATTACCAAATCAAATGACCGTACCAAGCAGCCGAGCACgggagaaaaattgaaatccaaCCAACCGTCAAGCTATTTACGCCGACAGAGCTTCACCATGGTCAGAAAGAGAGTGAGGTTTTCATCCGATGGTGAAGAACAAGAACACAAGATGAGTGATGTGGGACGGGTGCTAACCGAAAAAGTGCATCAGGGAAACTGCCAAATCCAGAAAAAGATGACATTGGCAGATCTAAAGCAGAAAAATCCTCCcgggtttaaaaaatttcaggaGACAGTTGATTCCCAAATGCTGAATGAAGAAGTGGCTTTAATGTTATGGGAAGATATTTTCAAGCCTTTGTACACGTTTGATTTGCTGCAAACGGACCCTAAATTCTTAGAGATGTAATTATGTAAGTTGAAAACTCGATATTAGGCAAGTATATTTAGTGTGGTTAAAATGGTTTGCTTTCgtgcaaaaatttaaagaaatataaagaCGTGTACTATGAAATTAACACATAATTAAGCAAATAACTCGTTAATGGATAACCGCACTAATTAAGGACTAATCATTTGGGAGGGTGAGTTTCAgagtttggaaaaatttttaattcattgttaTTTCTTCAGCttgtttttcaatatcattCATAGTCTTGTTAGCCAAACAACATTGTTCTTGTATTCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202 all species →	SKI	Shikimate kinase	Domain	Interproscan
PF14821 all species →	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000623 all species →	Family	Shikimate kinase/Threonine synthase-like 1	Interproscan
IPR037158 all species →	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031322 all species →	Family	Shikimate kinase/gluconokinase	Interproscan
IPR000634 all species →	Binding_site	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Interproscan
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR029144 all species →	Domain	Threonine synthase, N-terminal	Interproscan
IPR004450 all species →	Family	Threonine synthase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43515 all species →	THREONINE SYNTHASE-LIKE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01733	thrC; threonine synthase	EC:4.2.3.1	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.