Gene detail

Detailed information of XP_058957338.2 in Pocillopora verrucosa

Genomic Location: chr7:3000557...3003565
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059101355.2

TCACGATGGAGGCGTGGGGCTTTATTCTTCAGCTCTCTTTTCTAGCCCTTAGTATGAAGGGAATTAATGCCGAGAAACCTGCTTGCAACAGCGAGATATTCTGCCGCGGCGATCTTCTTCACACCGTTCAAATGGCTCGTATTTTTAACGACTCCAAGACGTTTGTTGATATGAGACTCCAGAGTGACGAAGCGGACGTTTTGCAGGCATTCAAGGCTCTTGGACCATCGGCTAACATATCGAAAGAACAAGTGATCAAgtttgtgaatgaaaattttcatctcGTAGGACATGATTTGCAACAGTGGACTCCACTCGACTGGCGAGAAAATCCCGCTTTTATTGATCACATAAAGGACAAGAACTTGAAGACCTTTGCATCGAAGCTCAATGAGTTATGGAAGAAGCTGGGAAGAAAGATAACTGACGAAGCGCGAATGAACCCCGCGCGATCTTCTTTGATTTTAGTGGCAAATCCATTTGTTGTTCCTGGTGGTAGATTTCGAGAATATTATTACTGGGACTCGTACTGGGTTGTAAATGGTTTACTCGTTTGCGGCATGAAAGACACTGTCAAAGGAATGATTGACAACTTCATTCAGCTGGTTAACACCTTCGGGTTTGTTCCAAATGGGGGTCGCATTTACTACACAAATCGAAGCCAGCCTCCATTTCTAATCCCAATTGTGGGCCTTTACCTCAACAAAACTGGCGATGTAGACTATGTGAAGTCCATTTTGAATGCCCTGGAGAAAGAATACACATTTTGGAGGAAAAATCGCACTGTTGAAGTTGAATTGTCTTCTGGAAAATATAAGCTGTCCATCTACGCTGCAAACATGAATACCCCAAGACCGGAGTCTTATTATGAAGATATTCACACTGCTCAAGAAGTACCTGAAGACGCCAGATCAACTCTGTTCCAAGACATAGCATCCGCTGCCGAGAGTGGCTGGGATTTCTCGACCCGATGGTTTAACCATACTGATTACAAGAGGGGGTCCCTCAGTAGTACCCGGACAAGGCAGATCATACCCACAGATTTGAACAGTATTCTCTATGCTTGCGAGAATCTACTAGAAAAGTTCTTTCGTATGACCGGAAACACTGCTAAAGCAGATGAGTATAAAAGCTTCTCAGAGGCCCGTGCAGCTGCTATAGAAGCTGTATTATGGGACGAAAAGGGACTATGGCTTGACTACGATCGgcaattgaagaaaagaaggGGTGATTTTTATGCGTCAAGCGTGGTTCCACTCTGGGCTGGGGTTATTCGGGGCAACATTACAAGAGAGATGATAGTTCTGAGGACGCTCAAGAGACTTAGAGTCCTCGATTACCCTGGGGGTCTCCCCACCTCGTTGTTCTCATCAGGTCAGCAATGGGATTTTCCAAATGCATGGCCACCCTTGCAACATATGCTTATTGCAGGTCTTGCAGAATCAAACGGCGAAGGGATGAAACAGGAAGCCTTGAATTTCGCTCAGAAGTGGATCACTACCAACTACAAGGCGTGGCGTGCTACCAGTCATATGTTTGAGAAATTCAACGTGAGCGTTCAAGGTGCCCCAGGGGGTGGGGGTGAGTATGATATTCAAGTCGGGTTTGGTTGGACCAATGGAGTCATTCTAGACCTGCTACAACGATACCCAGACGAGTTGGTCAGCGGACAAGCGCACACAACACTTGTTAGAAATCCACCACCAAAAGCCAGCGGATATCTGTGTCTTGTGTCGACTAATCGGACCTTGTTTATGTGACTAAATCTCCTGCCATGTTATGGTGTCTGGATTGTGTGACGTTTCCACTGTAGCAGAGCGCTACGTCTGGAAAAATCTCTCCACTGCTTCAGCTGCGGGATAAAACACTAGTTCATTGAAATGCACACCATCCAGAGTCCCTTTCGGGTAGGAGCTTGAAACGGGGTAAACATCGAGAACTAAGAAACCAGCCTTGCACATCGCCCAATTCGCGTAAGCATTGAATAGTTGTATTCTCtaaacaagataaaaataaagtgTAAGAATCATCTCAACTCAAATAGAGGTAACTTTTACCAgactatttatttatttatctcctaATTTATTTAGTCTTGAAGAGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01204 all species →	Trehalase	Trehalase	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001661 all species →	Family	Glycoside hydrolase, family 37	Interproscan
IPR018232 all species →	Conserved_site	Glycoside hydrolase, family 37, conserved site	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23403 all species →	TREHALASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004555 all species →	Molecular Function	alpha,alpha-trehalase activity	Interproscan
GO:0005991 all species →	Biological Process	trehalose metabolic process	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005993 all species →	Biological Process	trehalose catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01194	TREH, treA, treF; alpha,alpha-trehalase	EC:3.2.1.28	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.