Gene detail

Detailed information of XP_058957514.2 in Pocillopora verrucosa

Genomic Location: chr4:30199828...30208206
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059101531.2

TAGAGAACCGCCAAAACTTAAGCATATTTCTACGCGGTCCTAGGAGTCTTAACTTCTGAGCgaactttgttttactttgctttgAGGTTAGCTTACTTTCCAAAATGGCTACAACTGTAATATCACCTCGCACTCCGGCGTCTTCAGCGAGGGTCGAGGTGGCCTCCCCGACGAAGATGACCCGgattcaagaaaaagaagaacttCAACACCTGAACGATCGTCTCGCCGTTTACATTGACAGAGTCAAATTCTTGGAAGAAACGAACAGCAAGTTGACAGCAGAAATAACTGTGATAACGAGCAAAAAACAGACTGAAATTGAAACCGTGAGGAACTCACTTGAAGCAGAGCTGAGGGATGTAAGGAGGTTGTTGGACGAGGTCGCAAAGGACAAGGCACGCGAGCAGATCGAGAACAAGAAGAACGCTGCTCTGGTCGAGGAATTCAAGAAGAAGTTTGAGAAAGCAGCTGCAGCACACAAGAACAGTGAAGATGCCTTGAAAGCATCTCAGAGAAAGTTGTGTGATCGAGATGCACAGCTAGCTAATGTAAATCAAGAGGCAAAGAAGTTAGAAGCAGTTATCCAGGACCTAAGGAAAGAGTGCCAAGAACTGAAGGATGCTTTGGAATCAGCTAAATATGCCCTTGAGCAGGAGACCCTATCGAGAGTGGACCTCGAGAACAAACTCCAGTCCAAAGAAGAAGAACTCAATTTCAAGAAAGAGATGTACAGTAAGGAAATGATTGAGATCCGTTCTCAGTTACAAAGTGTAGAGTCACAGCGCAGCAAAATAGAAGCTGAAGCAAAGAACAGATATGAAGGAATCTTGTCAGAAAAGCTACATGAACTGAGAGAGATGTTTGATAGCGAGGCCAGGCAATATAAAGATGAAACTGATGGTCTTTATGGTGCTAAGtatgatGAACTCCAGAGGATGAATGCAAAGGATTTGGAGGAGTTGACACTGatcagagaagaaaaaagaactttgtCAATCACTGTTGAAAATATCAAATCAGAACTAAACCAGTTGCAGTCCAAGAATTCAAGCTTGTTACAAAGAATTGAAGACTTAGAAAGTTTGCGTGCTAGTGACCAAAAGATAGCTGATGAGGCGATAGCAAACAGAGATGCACAAATCAAAGAACTACGCAAGAGAATTGATGCTCAACTCAGGGAATATGAGGATCTTATGGGAGTGAAGACTGCTCTTGATCTGGAGATTTTGACTTACAGAAAGATGTTAGAAGGAGAGGAATCAAGGTTGAACATAACTCCCCCAGCTTCTCCAGTATTTGGAGCCTCTGCAAAAAGTGGCAGACGTGCTGCTAAGCGAATTCGCACAGAGGATGAGACTGTAGAAACTAAGTATTCAAACAAAGGTTACATTCAGATAAAAGAGGCAAGTACAGATGGTACCTTTGTCAAGCTGTTCAACAGTGGAGCCAATGATATGCCTCTTGGTGGCTGGAGTTTGGAAAGATCAGTAGATGGGGAACCACCTGTAACCTACAAGTTCACACCGAAATATGTCTTGAAAAGTGGATTTTATGTAACAATTTGGGCATCCCAAGGTGGCGGCCAGCATAAACCACCTTCAGAACTGGTATTTAGACAGAAAGCCAGCTGGGGTGttggtaaagaaacaaaaacagtgtTGAAAGATGCAGATGGCCAGGAAGCAGCTTCTGCAATTATTGAAGAAGTCAGCATTAGGACTGATGAAATTGACAGTCGGCGACAAAGTATGATGTCTGGACAACGCGAGgGTGAAACTAGCAAAGGTTGTGTAATTCAGTAGTGCTACAACTTTTCAATTGTAACAactgattttgagctttttagTCAGTCCTTCAGTttgaagaacaaaataaaattatgagcTATATCTTTTTGTGTAGAAAAAAGAACTTGCCAAAgtacttttttatttgtaaaaccTGTTTGTAGTACAATTTTTTAACCCAAATTTTCAATACTCCAATTGATTGTCTACATTCTATCATCACATTCTGCTTAAGGTAAACTACGTTTCcattgtatttattttgaatgaaatctTCAGTGTACAAGGGCTTCTAAAGCTTTTATCATAACAGCAGCCTAAACATTTTGTTcattaaacttaatttttaGAATGAGAATAATATATTTTGTGTGGGGCTTAGAAAGATAGTGGTGTTGATGCATTCCAGTGATACATTGTGTGCATTTTTCTGAAAGGGAAAGTTTTAAAGGACCTGCTCAAAGATTTACCTTATGAGACAAGGTGAACAGGTCAAGTACTTGAATGCAATTTGTGCGTGGAATTTCCTTAACTTTTCTAAAGGGCAgactggaaaatatttttctctaacattttcacttttcttcttttctaaaATATCTTGTATGTTTTGTACTTTTCTGGTTTGCCAGTAAAACTTGgagtcttttctttttaagatgTATTCATTGAGGTGAGATTTTGTATGCAGTAGGTTGACCATGCAGTTTTTGTCTGCAGTATGAATAAACTGACCACCTGTCAATCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00932 all species →	LTD	Lamin Tail Domain	Domain	Interproscan
PF00038 all species →	Filament	Intermediate filament protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036415 all species →	Homologous_superfamily	Lamin tail domain superfamily	Interproscan
IPR039008 all species →	Domain	Intermediate filament, rod domain	Interproscan
IPR001322 all species →	Domain	Lamin tail domain	Interproscan
IPR018039 all species →	Conserved_site	Intermediate filament protein, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45721 all species →	LAMIN DM0-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005652 all species →	Cellular Component	nuclear lamina	Interproscan
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0007097 all species →	Biological Process	nuclear migration	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0051664 all species →	Biological Process	nuclear pore localization	Interproscan
GO:0090435 all species →	Biological Process	protein localization to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058957514.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.