Gene detail

Detailed information of XP_058958245.2 in Pocillopora verrucosa

Genomic Location: chr4:731413...733784
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059102262.2

ATGGCAGCTAGGTGGAAGAGTTTATCGTGGAtggttaaaagtttttattccttaAATAGGACTCTTTCGTTGTACCATTCACAAAACTCATCCTTGGTGAGATACAATTACAATGATTTATATACGCAATTGAAGAGAAACTACAAATACATTCTAGACGATAAATTGGCCGCTAAAATTGCAAAAAGGCTTGAACCTTTACGAGACGAATCAATAGTTGTAACAAATCCTGGTACGGGAGTTCTTGCGAAAGCATTATTGAAAGCCGGAGCGAGTCATGTTATTGGACTTGAACCGGAGAGGAAATTCCATCTGTCGTTAACAGACCTCAAATCGGAACTTCCAGAAGGGGAAAGATTTGAAATCCTTCATGGTGATTTCAGTAAAATCGACCCTCATCTAATGAAGAAAGATGTCTGCATCCCTCCAGCTATTTCATCCGAGGATGTGCTTCGATCGGTTAAACCCCAGCCGTGGGAATCCGATCATTTAGCAGCGAGATTTATTGGTATCGAGGCTGCTGTTAACCCTGACGTTGTGCACCGAAATTTGTTAAGGCATCTTGGGGCAATAGCAGCAAAGAACGGCATCTTCCACAAAGGGAGGAGTGAACTGGCTTTTTTCTTTGCAGAGGATCGAGCGCATAAAATCACTGCTCAGTTTGGGAGTAAATATTACAACAGACAGTCAATCATGTTGGAAATGTTTTGCGATGTAAATATTTTACTCCGAGAACCCTGTTCAATGTTTTATCCtgttcaaagaaaagaaaaagatagtTTTCTGACATTGGTGAGTATtatacctaaaaaaaaaccaagtgtGGACATAGCAAGGGAAGATCTGGAATATTTAAACTACTTTATCAGACTTCTTTTGGTTAAACCAAAAAGCAAAGTGTTAGATGTAATGGAAACTATTAGCCCAGGAAGCCATACGATTTTTGATGAGCTAGAGTTTGCAGATGACCTTACAGTAAGAGACCTTTGTACTGAGCAGATCAGTCAGCTAGCTAGTGCTTTTTTCCACTGGAGAGGAAGATCACTGAATTTTTTCTATGATGTAGGAAGTCATGAAGTAAGAACAAAGTAGGAATTGAATAACCCCAAGCTCTCTACCTGTAATTATCAATAAACCTCATTCTGATTGTTCATATTGGCTTTTTAGTGACCAACTCAGACCTTCACCCCGGGTGCTTGCctgaatgttttttctttcatttttccacTATTTTGCtgattcttttaaaattccATTCTAACAGGGAACATAATTTAGGAAATGACTAGTCTGGCTAGAAAGAACTtataagcaaaaaaattattatttttgatagCCTGATCTGGTTGACTGGTTCTGACTTATGGTATGTAACCTGAGAGAGGTGAATAAAATGCCCCTtgttcccctccccctcttacCAACCATATTCTTTGTGACAAACTTAAATGCccattttttaataattgtaaGGAAAAACAATCAATTTGATGTCACTATTAAGTCTGGGCAAGGTGACATTCTTTGGTATCTTGTTTGACAATGAACTTCAAAGTAAGAAAATTGGCCATTCTTAAGAGAAATCAAaggtaaaaatcattttaagtctATTGAATGTAAATCATGATATTTGTTGAGCCTTTGATGTGTATGGTTTtggcatttttttggtttctgggGTTCCTTCAATTGaaaggtcaatttttttgtggagAAACTATATAACATGTAAATCATGAAGGGTGGAGATTGATCATGGAAATTTTCTCTGAGGCCCCTTTAGTCATGTAGCAGACCTTCTGATTAACAGGAGAAATGTTTGATGGGGTTAAAAGGATTATGTGCTGAATGTGATGGCATGATTTCAGTCAGTTTCATTTGTTTCTGCCTGTTACAATGATGATTGATGGCAGAATGTAACAAAATTACAAGCCTATCCCTGAGCCACTTTGTGGAAAGGGGCTCTAATAAGGCTAATAATTTTGGTCCCTTTTTACATTCTTTTCTTTCCTAGCATATGGTGGTTAATATCAGAGTCTGTAGGGTGTCTGTAGGATGCAGCAAACAAGAACTTTGTAAGAGTGAGTCTATTTTATTAACAGATCAGTTCCTTTGGAATAAGCTTGTCATACACGCTtgtcaagataatttttttaaggaagttAAATTACTTCATACCTTAGGGAGTGAGTTCTTGTGAAAATCACCCCTTAATGACTAAAACTGTTTGTTGTCGAATATTACAACtgtaatgataatttttaatgcAGTTTGATATTTGAGCCTTGTTTTGTGGCCTTGCCCATGTTTGCCAATGTTAAATAgcagtaataattttttaatgcagTTTGATATTTGAGCCTTTAAGTTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398 all species →	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR001737 all species →	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR020598 all species →	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan
IPR023165 all species →	Homologous_superfamily	rRNA adenine dimethylase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11727 all species →	DIMETHYLADENOSINE TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000179 all species →	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006391 all species →	Biological Process	transcription initiation at mitochondrial promoter	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0034246 all species →	Molecular Function	mitochondrial transcription factor activity	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17653	TFB2M; dimethyladenosine transferase 2, mitochondrial	EC:2.1.1.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.