Gene detail

Detailed information of XP_058958758.2 in Pocillopora verrucosa

Genomic Location: chr8:308330...314513
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04939 all species →	RRS1	Ribosome biogenesis regulatory protein (RRS1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007023 all species →	Family	Ribosomal biogenesis regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17602 all species →	RIBOSOME BIOGENESIS REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14852	RRS1; regulator of ribosome biosynthesis	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.