Gene detail

Detailed information of XP_058959298.2 in Pocillopora verrucosa

Genomic Location: chr1:13590931...13597042
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131786281

ATGCTTCTGATCGCACGAGCGAAGCAAAATATCATGTCAATGATTCATTATTCAGGGTTAAGGGGACTCTTTTGGAGAGTAAATAGACTTAAATTTAACAAACTTGCAAGGAAAAAACACTTCTCCAAAGTTGTGACATCACAGCTACGTGGTAATGTCCAATGCTGGAACAAGCTGAACTTATTTCGAAGATCTTTCAGAGCGTCGTCTCTACTTTTTGAGGAAGATGGCAATTTAGATGGAAAAAGTCCAGAAAGTGCTAAAAGGGTCAGTGGAATAACGCCAACAGGTGTCGACATCAATACAGTTTTCAACGACGAACCTTCACTCGCAGAGCCCGAATCTTCAGAAGTTGAGAGTGGTACCCATGTCTATGAGTTTGAGCAACCGATTCCTAAGTGTCTTGGTTGCGGATCTGCTTTCCAAAGCGAAGATCCTTCACAGGGAGGCTACGTTATGCCTTCAAAGAATCCAATTACAGGTGAAAAAGGTCCAGTCTCTGAGTGGCTTGCCAGAACTTTGGTTTGTCAGAAGTGTTTCAACTTGAAACATTATAATGAACCTTTTCCCATCACAAAAACCTCAAGCGAGGTAATGGAGTACGTGGGACACATAGAAAGAAGAAAAGGATTGATTCTCTATGTTGTAGACATGATGGATCTTCCTGGAAGTCTTTTTCCGAATCTTCTTCAAACTGTGGGTGAAGCAAAAAGGATCATTATTGTTGGCAACAAAGCTGACATGCTTCCAGTGGAAGGAACACATACTGGAAAACAAGAACGACATTTGAAAGAAGTGCTCTTTAAAATGTGCCAAGCTCATGGCTTGGAAGGTGCCAACATTAAGAGTATGTGCCTGATCAGTGCCAAAACTGGTTATGGTATAACACAACTTGTGAGAAAAATCAGCGAACACTGGGATGACAAGGGAGACATTTATCTTATTGGCTGTAGCAATGCTGGAAAAACGTCACTATTTAACCTGTTGTTGGATTTATTTAGTGTTCATAAGAATGCTGACTTATTACAGAGGGCTACAGTTAGTTTATGGCCATGCACCACACAAAGGATGATAAGGTTTCCTATTGGTCACATGATGTTAGGGAAGTTGTTGAGAAGATTGCATGAAGGTGTTTATGAGCAAAAGCCTGATGATATAGAATATCAAATTGATGATGAGATCATATCTAAAGAAGAAACAAGCTACCGAGATAAAAAGAAGAAAAGTTCTATTGGAAAGGGAAGTTCAACAGCAATAGTTCCTTCACAAACAGGGCTTCAAACTTTTAAGCCAAGTTTTGTGATGTATCAACCAAACAGGAACCAGAGATGGCTGTATGACACACCAGGAGTTATCAGTGAAAACCAGATCACAAATCTCTTGACCATGGAAGAGCTAAGACGCTTGAATCCAAAACTGTGGTTTGTGCCTAGGACCTTCATTCTTAAACCGGGCTTTTCCTTACTGCTTGGTGGCCTGGCCAGAGTGGACTATCTTGAGATAAAAAGACAGAGTCAAAATGGTGAATGGGATGCCATTCCAAAGGCAATCGAGTCTATTTACTTTACTGTGGTCGCTTCTCCTAATTTACCAGTCCATATCTGCAGTGAGGAACGTGCTGTTGAAGTGTACGACAAACACGCTGGAACTGAATTACTTGGGATACCAGTTGGTGGTAAAGAGCGCATGGAAACGTTTCCCCCGCTTGGATCACAAGAATTCACCATTAAGGGAATAGGCTGGGACACGAGTGCTGCTGATGTGGTTCTGTCCAATGTTGGTTGGGTGGCTGTAACAGCAGGCAATGATTCGTTAGTGACGCTGAAAGCTCATACTCCTAATGCAGTTGGACTTCATGTCCGACAGCCGCCTTTGCTACCAACTAGTGTTAACGCACGAGGTAAGCGTGGAGTCAGTTATCAAGGGCACATCTGTCCTGACCGATACGAAGCCACGCGGAGAAGGAACCCTCAGTTTATAACCAAAGCACGGGGGCTGATACCTGCAGAATCTCAGTGGGTCAAGGAGATTACAAGTAAAAGAAAAGAACAGAGACTTCTATTTAAAGTTGAAAGGCGAAAGAGAGAGAAGGAATACAACTTACTGGAGGGGAGCGCTGTTAGCGATCCTCCATACATACCAGGAGCATCGTGGCTTCCTCTTCCTAGGAGTAAGTTAGAAGAGGCCGAAGAAGAGGAGGAGGAACTAAAGAAACTGACTGAGTAA

Transcript

rna-XM_059103315.2

TAGTGTGGTGACATGCTTCTGATCGCACGAGCGAAGCAAAATATCATGTCAATGATTCATTATTCAGGGTTAAGGGGACTCTTTTGGAGAGTAAATAGActtaaatttaacaaacttGCAAGGAAAAAACACTTCTCCAAAGTTGTGACATCACAGCTACGTGGTAATGTCCAATGCTGGAACAAGCTGAACTTATTTCGAAGATCTTTCAGAGCGTCGTCTCTACTTTTTGAGGAAGATGGCAATTTAGATGGAAAAAGTCCAGAAAGTGCTAAAAGGGTCAGTGGAATAACGCCAACAGGTGTCGACATCAATACAGTTTTCAACGACGAACCTTCACTCGCAGAGCCCGAATCTTCAGAAGTTGAGAGTGGTACCCATGTCTATGAGTTTGAGCAACCGATTCCTAAGTGTCTTGGTTGCGGATCTGCTTTCCAAAGCGAAGATCCTTCACAGGGAGGCTACGTTATGCCTTCAAAGAATCCAATTACAGGTGAAAAAGGTCCAGTCTCTGAGTGGCTTGCCAGAACTTTGGTTTGTCAGAAGTGTTTCAACTTGAAACATTATAATGAACCTTTTCCCATCACAAAAACCTCAAGCGAGGTAATGGAGTACGTGGGACACatagaaagaagaaaaggattGATTCTCTATGTTGTAGACATGATGGATCTTCCTGGAAGTCTTTTTCCGAATCTTCTTCAAACTGTGGGTGAAGCAAAAAGGATCATTATTGTTGGCAACAAAGCTGACATGCTTCCAGTGGAAGGAACACATACTGGAAAACAAGAACGACATTTGAAAGAAGTGCTCTTTAAAATGTGCCAAGCTCATGGCTTGGAAGGTGCCAACATTAAGAGTATGTGCCTGATCAGTGCCAAAACTGGTTATGGTATAACACAACTTGTGAGAAAAATCAGCGAACACTGGGATGACAAGGGAGACATTTATCTTATTGGCTGTAGCAATGCTGGAAAAACGTCACTATTTAACCTGTTGTTGGATTTATTTAGTGTTCATAAGAATGCTGACTTATTACAGAGGGCTACAGTTAGTTTATGGCCATGCACCACACAAAGGATGATAAGGTTTCCTATTGGTCACATGATGTTAGGGAAGTTGTTGAGAAGATTGCATGAAGGTGTTTATGAGCAAAAGCCTGATGATATAGAATATCAAATTGATGATGAGATCATATCTAAAGAAGAAACAAGCTACCgagataaaaagaagaaaagttcTATTGGAAAGGGAAGTTCAACAGCAATAGTTCCTTCACAAACAGGGCTTCAAACTTTTAAGCCAAGTTTTGTGATGTATCAACCAAACAGGAACCAGAGATGGCTGTATGACACACCAGGAGTTATCAGTGAAAACCAGATCACAAATCTCTTGACCATGGAAGAGCTAAGACGCTTGAATCCAAAACTGTGGTTTGTGCCTAGGACCTTCATTCTTAAACCGGGCTTTTCCTTACTGCTTGGTGGCCTGGCCAGAGTGGACTATCTTGAGaTAAAAAGACAGAGTCAAAATGGTGAATGGGATGCCATTCCAAAGGCAATCGAGTCTATTTACTTTACTGTGGTCGCTTCTCCTAATTTACCAGTCCATATCTGCAGTGAGGAACGTGCTGTTGAAGTGTACGACAAACACGCTGGAACTGAATTACTTGGGATACCAGTTGGTGGTAAAGAGCGCATGGAAACGTTTCCCCCGCTTGGATCACAAGAATTCACCATTAAGGGAATAGGCTGGGACACGAGTGCTGCTGATGTGGTTCTGTCCAATGTTGGTTGGGTGGCTGTAACAGCAGGCAATGATTCGTTAGTGACGCTGAAAGCTCATACTCCTAATGCAGTTGGACTTCATGTCCGACAGCCGCCTTTGCTACCAACTAGTGTTAACGCACGAGGTAAGCGTGGAGTCAGTTATCAAGGGCACATCTGTCCTGACCGATACGAAGCCACGCGGAGAAGGAACCCTCAGTTTATAACCAAAGCACGGGGGCTGATACCTGCAGAATCTCAGTGGGTCAAGGAGATtacaagtaaaagaaaagaacagaGACTTCTATTTAAAGTTGAAAGGCGAAAGAGAGAGAAGGAATACAACTTACTGGAGGGGAGCGCTGTTAGCGATCCTCCATACATACCAGGAGCATCGTGGCTTCCTCTTCCTAGGAGTAAGTTAGAAGAGGCcgaagaagaggaggaggaacTAAAGAAACTGACTGAGTAAACCTCGTATTGATAACCTAAATTATATTAAAACTTTGGGTACTCaactattttgattttaaggTATCTCCTGTTGTTAAGGTCTAATAACTAATTTCACTGATACTCATAGATACACCGACTTCAAAAGCGTCAGAGTTAAGTGTTTCAAATGGAACTCATGGTGTATCTGCGCTTGCTTGATATTTTGATGTTAATTATCTTGACAATATTTCGAGGTGACTCGTCTCCATTTTTTTACCCGCGGTAATTACTTTGAAGAGCCGACGCTTCGGGTGTGAGCCCGGCGCCTGATTGTGAATCGCGTGTGCAGATACATATGTATATTGCAGTTAAGAGTACAAGTAAattcttttttgaaatgttgA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21516 all species →	YqeH-like_C	YqeH-like, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052807 all species →	Family	Mitochondrial translation and respiration regulator	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048422 all species →	Domain	NOA1/YqeH-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46406 all species →	NITRIC OXIDE-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_058959298.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19832	NOA1; nitric oxide-associated protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.