Gene detail

Detailed information of XP_058961296.2 in Pocillopora verrucosa

Genomic Location: chr1:30810855...30828253
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131788227

ATGAGCCACCTTCTTCGGGATATTTCGGGTCTCTTCCGATGTTGGGAAATGGGCACTGGAGCTAGCAGCGGAGGATCACAAACAGGCTCGAACCCCAATGTCAAGGAGGGCTCCACACCATCAGCTGAGGACAAATTATCGAGGAAAACGTCTTCAATTTCGAAAAAACACTCCAATGGCTTCATAACATTAAGTTATGAGCCAACAAATACACCACTTATTCGGAAGCGGGGCTTTATCAAGGAAGGATTTCCCATTCATGGGCTTATTCAAGACAAATATTTTCTTATTAAAGATCATTTTGATGGAATCGACAAGCTCAAGACTTTGGACTTGTACGGGGCTCCGAATTTTCGAAAGAGTCGGGGTCCCTATCCGGTCTACGGAATGGGTCAACCGTCCAGAGATGGATTAGCACAAGTTATTCAAACTCTGGTTGAAAATGGACATAAGGAAATTGTCTCATTTAACTTGAGAGAGGAGCCAGTGATATTCGTTGGTCTCAATCACGACTTTGTGCCATACTCTCCACGGGACCCGACTAGCCTGAAGGGAAACATCGCTAATCACGGAGTGAAACCTGAGGAATTGGCAGAGACAGAGCTCAAAATAAGAGAGGAGATAATCAGGTTTTCAATCGATGAAGGAGGTAAATTTTATTTCTACAATAACGTGGAAACGTTCGAGGACGAACCGCACACGTACAACGTCGCATACGAAGAGGATTTGTGTGTTTTGGATGAGATATACAGCAGACAAATCTTCCTTACCCCTCTCCTCAGGTATTCTCGGATCCCTATAACTGCCACAAACGCTCCAGAGGAGCAGGATTTTGACCAGTTCATCACTGCCATTAAGGACATACCCCAGTTGTTCGACAAGAATTCCTCAGCTCCTCTGCCGGCCATGTTGTTCAACTGTCACGTGGGCCAAGGTCGTTCCACCACAGGCATGGTCATTGGATGTCTGATTACTTCACATAGGACTGGCTTCCCAACTGAAGCACACGCCATTCCAACGCCTATGGACGAAAACAACCCGAATTTGGAGAAGGGAGAATTCAGAATAATTCAACAGTTAGTGAATCTTCCCAATGGAACACAGATAAAACACGAGGTTGATTCAGTTATCGACATATGTTCTGACGTCATGAATCTGCGGTCTGTCAGCTTTGAATGTAAATGTAAACTAGAAGAAATAAAGGATGATTATAAAATTGAGGGTCATAGTGCACGTGAATACTGGTTAAGAAGAGGTCTGAGTGCCCTGGAAAGATATTTCTTCTTGATACTCTTTAACGCCTACTTACACGAGCAGTTCCCACTCATGTTTGCTCAAACGTTCCGGAAATGGATGCAGCACAGGCCTTGGCTCTACAGAATGTTGAGTCATATTGACGTCATGGAGAAAGGAGTGACGTCAGAATTTACGTCTAAATACCAAAATCAAACTTGTCTGGTTGCTGATGAACAAGTCAGTCTTGATGTTTTAAGCACTCAGCGGGAGTTTGAGGTGTCGAATTTCCGCAAGGTTCACGGATTCCCTATTTATGGCATGTGTCAGCCGTCAAGACAGGGCCTAAACAATGTTGCACATTATCTTTTGGGTCCAAAATGTCTTCATCCCAAAGTCGTTTTCTTAAATCTAAGAGAGGATCTTGTCGTGGACTGTGATGGAAGTACATTTAGTCCAAGAGAGTTATCAAGTCTGTGTGAGCATATGCCTTTCAGAGGACTGGACACTTCTGAGATTGAGCAAAAGGAGAGCGAACTGAAGTCAGAACTACTCAAGAAAGGAAAGAGACAATACACACAGGTGTACACTGACATTCAGTATGCTCCCCAGGAGCGAGATTTTCACAGCGTCATAACAGCGCGTGAAGCGGCAGAGCTCTGCATGGCAAAGAATCCCCAGATGCTGTATTTTAGAATGCCATTGTCAGAGGACAAAGCACCGGAGGAGAAGGACTTTGATCGAATATTAACAATAATGAACAGCCTGCATGAGATCTACACCGACGAAGATGGCCCTGCTATCGTCTTTAACTGCGAGATTGGCAAAAGTCGAACGACCACCGGAATGGCAATAGCAGCACTGATTTACTGCAACAAAAGGGGCTTTCCTGTTGGCACGAAGGTGGATGAACAAGATCCAGCTTGTGTCCCAAATGCTAAGTACACACTGGGTGAATTTTCGGTTATTCGTCACCTTAAGAGAGTTCTACCTTTTGGTCCACAGAGAAAACGTGAAGTTGATTATGTGTTGGATAGAATTTCAGAGACAATGACACCCATGCATTATCACTCAAGAGAAGTTATATTCTCTACATTTAATTTGTATCGCAATGGCGTGTGCAAGAACCGAGAGGAAATTTCGGAGCTGAGAAAAAAGAGTCTCAACTTGTTGGAGAGATATTTCTACCTTATCTTGTTTAATACGTACTTACACATGGAGAGGAGAACCAAATGGCAGCGTTCTTTTAGTCAGTGGATGACTGAAGTTGCAACAGCTGCTGGTGTTTACGAGATCCTCGACAATTTTGGCTTCCATGATTTTGAAAAGACAGAGGAACGCTTGCGCGCCCTGCGCTGGAGATGGCGGGAAAGTTACAAGGGCAAGCCGTCATATTGA

Transcript

rna-XM_059105313.2

GTAAACGTTAGTTGGATAGAAAAGCTGTTAAGCAGACCTCACAAAAACTCGAGACGGAATCATCATTAAAGCTATGGGTTTCTAATTCATGGGGTGTGAGAACAATCGTAGACATGAGCCACCTTCTTCGGGATATTTCGGGTCTCTTCCGATGTTGGGAAATGGGCACTGGAGCTAGCAGCGGAGGATCACAAACAGGCTCGAACCCCAATGTCAAGGAGGGCTCCACACCATCAGCTGAGGACAAATTATCGAGGAAAACGTCTTCAATTTCGAAAAAACACTCCAATGGCTTCATAACATTAAGTTATGAGCCAACAAATACACCACTTATTCGGAAGCGGGGCTTTATCAAGGAAGGATTTCCCATTCATGGGCTTATTCaagacaaatattttcttattaaagATCATTTTGATGGAATCGACAAGCTCAAGACTTTGGACTTGTACGGGGCTCCGAATTTTCGAAAGAGTCGGGGTCCCTATCCGGTCTACGGAATGGGTCAACCGTCCAGAGATGGATTAGCACAAGTTATTCAAACTCTGGTTGAAAATGGACATAAGGAAATTGTCTCATTTAACTTGAGAGAGGAGCCAGTGATATTCGTTGGTCTCAATCACGACTTTGTGCCATACTCTCCACGGGACCCGACTAGCCTGAAGGGAAACATCGCTAATCACGGAGTGAAACCTGAGGAATTGGCAGAGACAGAGCTCAAAATAAGAGAGGAGaTAATCAGGTTTTCAATCGATGAAggaggtaaattttatttctacaaTAACGTGGAAACGTTCGAGGACGAACCGCACACGTACAACGTCGCATACGAAGAGGATTTGTGTGTTTTGGATGAGATATACAGCAGACAAATCTTCCTTACCCCTCTCCTCAGGTATTCTCGGATCCCTATAACTGCCACAAACGCTCCAGAGGAGCAGGATTTTGACCAGTTCATCACTGCCATTAAGGACATACCCCAGTTGTTCGACAAGAATTCCTCAGCTCCTCTGCCGGCCATGTTGTTCAACTGTCACGTGGGCCAAGGTCGTTCCACCACAGGCATGGTCATTGGATGTCTGATTACTTCACATAGGACTGGCTTCCCAACTGAAGCACACGCCATTCCAACGCCTATGGACGAAAACAACCCGAATTTGGAGAAGGGAGAATTCAGAATAATTCAACAGTTAGTGAATCTTCCCAATGGAACACAGATAAAACACgagGTTGATTCAGTTATCGACATATGTTCTGACGTCATGAATCTGCGGTCTGTCAGCTTTGAATGTAAATGTAAACTAGAAGAAATAAAGGATGATTATAAAATTGAGGGTCATAGTGCACGTGAATACTGGTTAAGAAGAGGTCTGAGTGCCCTGGAAAGATATTTCTTCTTGATACTCTTTAACGCCTACTTACACGAGCAGTTCCCACTCATGTTTGCTCAAACGTTCCGGAAATGGATGCAGCACAGGCCTTGGCTCTACAGAATGTTGAGTCATATTGACGTCATGGAGAAAGGAGTGACGTCAGAATTTACGTCTAAATACCAAAATCAAACTTGTCTGGTTGCTGATGAACAAGTCAGTCTTGATGTTTTAAGCACTCAGCGGGAGTTTGAGgtgTCGAATTTCCGCAAGGTTCACGGATTCCCTATTTATGGCATGTGTCAGCCGTCAAGACAGGGCCTAAACAATGTTGCACATTATCTTTTGGGTCCAAAATGTCTTCATCCCAAAGTCGTTTTCTTAAATCTAAGAGAGGATCTTGTCGTGGACTGTGATGGAAGTACATTTAGTCCAAGAGAGTTATCAAGTCTGTGTGAGCATATGCCTTTCAGAGGACTGGACACTTCTGAGATTGAGCAAAAGGAGAGCGAACTGAAGTCAGAACTACTCaagaaaggaaagagacaaTACACACAGGTGTACACTGACATTCAGTATGCTCCCCAGGAGCGAGATTTTCACAGCGTCATAACAGCGCGTGAAGCGGCAGAGCTCTGCATGGCAAAGAATCCCCAGATGCTGTATTTTAGAATGCCATTGTCAGAGGACAAAGCACCGGAGGAGAAGGACTTTGATCgaatattaacaataatgaaCAGCCTGCATGAGATCTACACCGACGAAGATGGCCCTGCTATCGTCTTTAACTGCGAGATTGGCAAAAGTCGAACGACCACCGGAATGGCAATAGCAGCACTGATTTACTGCAACAAAAGGGGCTTTCCTGTTGGCACGAAGGTGGATGAACAAGATCCAGCTTGTGTCCCAAATGCTAAGTACACACTGGGTGAATTTTCGgttATTCGTCACCTTAAGAGAGTTCTACCTTTTGGTCCACAGAGAAAACGTGAAGTTGATTATGTGTTGGATAGAATTTCAGAGACAATGACACCCATGCATTATCACTCAAGAGAAGTTATATTCTCTACATTTAATTTGTATCGCAATGGCGTGTGCAAGAACCGAGAGGAAATTTCGGAGCTGAGAAAAAAGAGTCTCAACTTGTTGGAGAGATATTTCTACCTTATCTTGTTTAATACGTACTTACACATGGAGAGGAGAACCAAATGGCAGCGTTCTTTTAGTCAGTGGATGACTGAAGTTGCAACAGCTGCTGGTGTTTACGAGATCCTCGACAATTTTGGCTTCCATGATTTTGAAAAGACAGAGGAACGCTTGCGCGCCCTGCGCTGGAGATGGCGGGAAAGTTACAAGGGCAAGCCGTCATATTGATAATTCGGCGCGAAATGTAACTTCTACTCAGAGAGAGCACTGTGGACTGTGAAGGAAACGGAAAAGCGCCAAAATTTCCATCAAAACCGAAAAATGGAAATACAATCGCTCCAACCAGAAATTAAGGATCTGAGCTGAAGACGCGAAAGAATATCAAAACCTAAAAAATAGGAGATTTTGTGCGCCTATCTCAATGAACAAAACCGATATAAACTGGTGCGCCTTTCTTCTGATGATAATAACTAAGGTTTAGGTGTATTGTTACATATTTATGATCTCTATTTATCGTAAGTCATTGAGATGGTAGCTGTAGTTATTCTCTCCCTGAATGATACAAGAATTCTGGAGAATTGCATGAGCGGACTCTGTCTTGAGCTGCTTCGCTGGGCAATAATGGGCTCTAGACTTGACAAAAGCCAAAGCAATGGTAAAAACTGTATAGATATTGCCCAAAGGAGATTAGAGCAGACCACTATTACGTCTGCAGTGCTATTTTATCTCTACCTTGCTGTAAATAACCCACTGATAACACGAGCGaactttaaaatgaattaaCTTGCGCTTTTTATGGTATTTACCAGAACTGCTCCTATAGAAACTCTCTTGCCAATCAAGAATAACGGGATCATAAATTTCTACATCATGAGTGTTTTTCAGTTCATTCTGACatgaaatgaaatacaaatttaatATTTGTACCAGTTGATCGATAAATTATTATCTCCTGaaacaaaataaggaaaacaaaacaaaacaaaacaaaaatgaaaattttatgggAAGCGTTAGGCCCAAgttatttttgtgtttaaattaaaCATCAAATAAACttaaacatttaatgaatttgTTTGTAATTAAACTCTGTTTACAACTGTTTATTGGTAGActtaaataaaggaataaacGTTATCCTAACCTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14566 all species →	PTPlike_phytase	Inositol hexakisphosphate	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR050561 all species →	Family	Protein Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23339 all species →	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058961296.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.