Gene detail

Detailed information of XP_058961650.2 in Pocillopora verrucosa

Genomic Location: chr1:1851058...1857959
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131788578

ATGTCTAAGAAATCAAGAGTGGTAAAGACGTATGGAAGGCATAAACATCGGACTGTGAAGGCTCAAATTTGGCTGTCCCCTGACGAAAATGTTCATTCCCCGTTTGGAAACGGTTTCCCCTCCAAAATCGAAGCAAGCTCATCGAAAAATGTTTTCAAGCCGAAGTCGTCAAAATGGTCCAAGCACTCGAACAAAGTTACAACCTCACGAGCTTCATCTGCTTACGAAAGCTGTGCGATTCCAATCGTTGAGAAACAAGAACTTATAATAATCGATGACAAAGAAAACAGCCATACTTCAAATTCGTCAGCTGATGACCAAAAGGAGAGGAAGTTCAAAAGGAAAAGGCAAACACTATTCAGTAATTGTACGCCGCTATCAACACAAAAAGGTTCAAATGTTGATTCAACTTGTCCGTCGGAAAGTGAAAAGTCGGGAGTCAAAATACCTGAGGTTGTTTTGGTGAATGATAGTTTAGAGATTAGAGAGAAAAGCACCCGCCATATTCACGATGTCATTTGTGTTGAAGACAGCGTAGAAGATGTTGTTTTTCAATCTGGTTGCAATAACCCAACAAATTTAAGTATAAATACGTCAAATGGAAAGCCAAATTTGAGTGGAAATGCTTCTGTATTCAGCGATTGTTCTTCAATATCAAGAGATGGAGAAAATCGCGATTTAGGAAATAAAGACTGCATCAAACTTAACAAAAACAACAACGCAGTTTTTCAATTTGACAGCTGCCACTCAACCTATGCCACTTCAACTCCAGTATTTAATGGTGACAATTATTTAGCAATTGGAGGAGTAGGCCAATCAGATTCCCAAAACTCTTATTCAATAGATGGTAAGGTTATTTTGGAACCAATTAGAATCACACCAATTCAGTGGGAGAAATCATTGTTATTGTTATCTTCAACTGAAAAACCTAGCAACGAGAAAACTAGCCAGTTGTCATCTGATGAGCACAAAAATTCAGTTGCACTTAAAACTTTGAGCTTAACCAGCAGTGACAGGACATCCAAAGAGATGAAAGAGTGTGTGGTTTCCTTGGAGAAGTTGAGGATAACACCCTTAAAAAAGAAGGGTAAATATCTCACAGCAACATTATCTGGTGATGGAAGCCTTCCATTCATTAACAGAGGGAAGTCCCAGCTCTCATTTGCTGAAGCTTTAACTCCAGTCAAGAAAAACCTTACCAAAACAAACTTTGGAAAGGAATCTGAAGAAGTAAAAGAACTCACTAATTTTGAGAAGGTCCTGATGGAGTGCAATCAAGAGAGACCAGTGAAATTTTCAGAAATCTTAGACAAGAGTTTACTGGAGAGTTGTGTTAAAATTGGAGAGGGAGTTTATGGAGAAGTATTTAAATCTCAGTATAAAAATGGACAATCAATTGCACTGAAGATCATCCCAGTTGAAGGTGATTTTCAAGTGAATGGTGAACCCCAGAAATCATTTGAAGAAATTTTGCCAGAGATTGTTATTTCCAAGGAGCTGAGTTTACTTGGAGAGTCTTTTGAGAATGACAATGGGACCACAACCTTCATCACTGTCCACAGTGTGACGTGTATTCAAGGTGGATATCCCAGCCATTTGATATCAGAGTGGGACAAATGGGATACTAAACACACATCAGAAAATGACAAACCTGATATCTTCCCGAGTGATCAGTTCTTCATCGTGTTCGAGTTTTCAAATGGCGGCAAGGATTTGGAGAGCTTTGAGTTCAACTCCCTGTCAGAGGCATGGAGCGTACTGCATCAGACAGCCCTTGGACTGGCGGTGGCTGAGAACGCGCTTGAATTTGAGCACCGTGATCTGCACTGGGGAAATGTTTTAATTTGTAAGACTGAGGACCAGCTTGTAGAGAGCACTTTGCAAGGAGAGAAAAAGCTGGTACCGAGTCATGGTGTCCGAGTTAGTCTGATCGACTTTACTCTCTCACGGCTGAAAAAAGATGGCGTGACGGTGTTTTGTAACATGGCAGAGGATGAATCGTTGTTCACTGGAAGAGGAGACTATCAATTTGATGTGTATCGGCTCATGAAGAAAGCGAACAAGAACGACTGGGAGCCATTTGAGCCTCACTCAAACGTGCTATGGCTTCACTACCTTGCCGACAAAATGTTAAAGAAGAAGAAATACCCGAGAAAAGATAAAGAAACGGAGACACAGCTGAAGATGTTTTTGAGACAAGCAAGAAAATGCTCCTCTGCTACAGACATTATTCATGAGCTTTTCGCTTAA

Transcript

rna-XM_059105667.2

TTTGCCTTTGGGAAATAGgcattttttttgtcctaatTCATTAAAAAGTCAAATGTCTAAGAAATCAAGAGTGGTAAAGACGTATGGAAGGCATAAACATCGGACTGTGAAGGCTCAAATTTGGCTGTCCCCTGACGAAAATGTTCATTCCCCGTTTGGAAACGGTTTCCCCTCCAAAATCGAAGCAAGCTCATCGAAAAATGTTTTCAAGCCGAAGTCGTCAAAATGGTCCAAGCACTCGAACAAAGTTACAACCTCACGAGCTTCATCTGCTTACGAAAGCTGTGCGATTCCAATCGTTGAGAAACAAGAACTTATAATAATCGATGACAAAGAAAACAGCCATACTTCAAATTCGTCAGCTGATGACCAAAAGGAGAGGaagttcaaaaggaaaaggCAAACACTATTCAGTAATTGTACGCCGCTATCAACACAAAAAGGTTCAAATGTTGATTCAACTTGTCCGTCGGAAAGTGAAAAGTCGGGAGTCAAAATACCTGAGGTTGTTTTGGTGAATGATAGTTTAGAGATTAGAGAGAAAAGCACCCGCCATATTCACGATGTCATTTGTGTTGAAGACAGCGTAGAAGATGTTGTTTTTCAATCTGGTTGCAATAACCCAACAAATTTAAGTATAAATACGTCAAATGGAAAGCCAAATTTGAGTGGAAATGCTTCTGTATTCAGCGATTGTTCTTCAATATCAAGAGATGGAGAAAATCGCGATTTAGGAAATAAAGACTGCATCAAActtaacaaaaacaacaacgcAGTTTTTCAATTTGACAGCTGCCACTCAACCTATGCCACTTCAACTCCAGTATTTAATGGTGACAATTATTTAGCAATTGGAGGAGTAGGCCAATCAGATTCCCAAAACTCTTATTCAATAGATGGTAAGGTTATTTTGGAACCAATTAGAATCACACCAATTCAGTGGGAGaaatcattgttattgttatcttCAACTGAAAAACCTAGCAACGAGAAAACTAGCCAGTTGTCATCTGATGAGCACAAAAATTCAGTTGCACTTAAAACTTTGAGCTTAACCAGCAGTGACAGGACATCCAAAGAGATGAAAGAGTGTGTGGTTTCCTTGGAGAAGTTGAGGATAACACCCTTAAAAAAGAAGGGTAAATATCTCACAGCAACATTATCTGGTGATGGAAGCCTTCCATTCATTAACAGAGGGAAGTCCCAGCTCTCATTTGCTGAAGCTTTAACTCCAGTCAAGAAAAACcttaccaaaacaaactttggaAAGGAAtctgaagaagtaaaagaacTCACTAATTTTGAGAAGGTCCTGATGGAGTGCAATCAAGAGAGACCAGTGAAATTTTCAGAAATCTTAGACAAGAGtTTACTGGAGAGTTGTGTTAAAATTGGAGAGGGAGTTTATGGAGAAGTATTTAAATCTCAGTATAAAAATGGACAATCAATTGCACTGAAGATCATCCCAGTTGAAGGTGATTTTCAAGTGAATGGTGAACCCCAGaaatcatttgaagaaattttgccAGAGATTGTTATTTCCAAGGAGCTGAGTTTACTTGGAGAGTCTTTTGAGAATGACAATGGGACCACAACCTTCATCACTGTCCACAGTGTGACGTGTATTCAAGGTGGATATCCCAGCCATTTGATATCAGAGTGGGACAAATGGGATACTAAACACACATCAGAAAATGACAAACCTGATATCTTCCCGAGTGATCAGTTCTTCATCGTGTTCGAGTTTTCAAATGGCGGCAAGGATTTGGAGAGCTTTGAGTTCAACTCCCTGTCAGAGGCATGGAGCGTACTGCATCAGACAGCCCTTGGACTGGCGGTGGCTGAGAACGCGCTTGAATTTGAGCACCGTGATCTGCACTGgggaaatgttttaatttgtaaGACTGAGGACCAGCTTGTAGAGAGCACTTTGCAAGGAGAGAAAAAGCTGGTACCGAGTCATGGTGTCCGAGTTAGTCTGATCGACTTTACTCTCTCACGGCTGAAAAAAGATGGCGTGACGGTGTTTTGTAACATGGCAGAGGATGAATCGTTGTTCACTGGAAGAGGAGACTATCAATTTGATGTGTATCGGCTCATGAAGAAAGCGAACAAGAACGACTGGGAGCCATTTGAGCCTCACTCAAACGTGCTATGGCTTCACTACCTTGCCGACAAAAtgttaaagaagaagaaatacccgagaaaagataaagaaacgGAGACACAGCTGAAGATGTTTTTGAGACAAGCAAGAAAATGCTCCTCTGCTACAGACATTATTCATGAGCTTTTCGCTTAAAATGGGaaatcaaattacaatttttttggaccaatctGGGTTAgcaaatagtttctatgaaacTTCAAAGAAGGGATAGGTGTTTACTCGCTATGAGTAGCATGTAAAGTACATGAGTTAGTAGAAGtgtaaaatcaaaatcaatatgTAAATAGACGATCTTTTGGATTTTAGAATATATATCATAGAGCTCAAATTGTTAATAATCGATAATATGCCGATGCCACTTATGTTCGCTTTGTTCCCCACTCACCCCACCTCCCCTTTTCAACCAAATTGTATCGTGGACAATTCGGAAAAAGGGAAATTGATACAAAATTACCAATTTGACCACGTTGTAATATTGAAACTTTTATTAGCAATATTGCATTTTAAGAGGTTTTAATGCCTACTAACTgggttttctttaaattctcaATAGCATATCGTGTAAATAGTAGCCGATATTATTAAAATTGCAATTCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12330 all species →	Haspin_kinase	Haspin like kinase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR024604 all species →	Domain	Serine/threonine-protein kinase haspin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24419 all species →	INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0072354 all species →	Molecular Function	histone H3T3 kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16315	GSG2; serine/threonine-protein kinase haspin	EC:2.7.11.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.