Gene detail

Detailed information of XP_058963193.2 in Pocillopora verrucosa

Genomic Location: chr1:27843736...27847121
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059107210.2

AGCACAAATTCAACTCGACGAATTATCTCACGTTGATCAGGAGGTCTTTATCTATCAGAATCAAGAGTCAGACCTCTTCTGTGCGCAAACTCATTTTTTCAGTGTCTGCTCCCTGACTCTGACTGCTTTTAGTTCGAGCGGAgttctgattttttaatttcaagagGTCGACTCTTGTTAAATCAACGCGATGTTCGCTTCAATTCTGGTAGTAATCTTTATTCTGAAGTCATTTTACGTGATTCAAACCGACAGTGTTGTAATTGGAGCCTTCGTGATGCCCCACGGAGGCATCGCTCTGGACCCACGCTACTTTAACACAACAAACGCCACAGCTAAAGCACAAGCCTGGTTGGTGCATGACGCTTCAAAACAAGTGGGCAAACAAATCGATGATCTCAAGCCTGATACCATCGTTCTCAGCACCCCACACGGAATTGCTGCCCCTGAAGATTTCATTTTCTATCTTAGCCCGAGAGGATTCGGATTTTCTGACACGGACAACTGCGCATGTCCACCGTGCTGTTATAACCTTTCCGTTGCCATGGATTCTAAAGGGAGTGAGAACCTTGTAAGGATACTCAAGGACGAAAATGAGAAGGTATCGTATCTGAGTGCATTCGGGCCTCCCGGAAACGAAGATGTTCCCTTCCCTTTGCGATGGGGCGAGGTGGTTCCATTGTATTTCACAAAAAGTGTTTTAGGCCAGCCAAGTAAGGTGATCATTCTGTCCCAGCCGAGTCGCAGGTACACGGAAAGCGTGAAGATGATCCCTGAGCTGCACCATCTCGGCGAAAGCTTGTTTGAAATTCTCCAATCGCAGCTGGAGAAGATCGTGGTCATCATTAGCGCTGACTTGGCGCATACTCACTTGAAATCAGGGCCGTACGGTTTCTCCACCGCCGCCGAGCCCTTTGACAAAGCGTGCGGAGCTTGGGTGAGCACCCAGGATTCTGAAAAGCTTGTAGTTGAAGCGGCGTCTTATGTGGAAAAAGCTCTTTCTTGTGGATTCACGGGACTGGTTATGCTGGACGGGATGTTAAAGGCCAGCCCTTTCACCTGGGAATCCAGGCTTCTCGCTAACTACCACCCGAGCTACTACGGCATGATGTTGGCGTCTTTTTTGCCTCGGTAATGATCGCAAACAACCATACAGTTTtctttatgaaataaaaacgtAAAGAAACGAGAGTTCATTTTGAAGATTAAGGTGCAGGTTCTGGGAAAACCAACACGATTACAGCAAATTATTTGGGGAATTCATTACTAGATAGCTTGCGCCTTTCTTCATTTATGGTCAATGAACAATACCTCCTAATTAATATCGAGAAACCCTGTATAATCTCCAATCAGTTACCTCGTCAACTCTAACAAGTTGTGTTCAGAGGATGGCCAACGTCCCATCCCTCAGGTACCCACCCTCGAAAGGCGCTCCTCAAGATCACCCAACGTCCCATCCCTCAGGTACCCACCCTCGAAAGGCGCTCCTCAAGATCACCCATGAACCAAGAGGTAAACCACATTCATCGCGGTAAACAAGCAACTTTATTTTAGATCATGTTTGTACATACAATTTTTTACATAGGtttacatatatacatattaCATATTTCAATTCCAGGATCTTTGTACACATTCGGTCTAGCCCAAAAGTACCCGAATGCAGTTACATTGTTTTCAGACATGTTTGGCATAGTGACCTACGCTACCTGGTTCGTTCCCTACAGAGATCCTGGTCAATGTGCGACTTCTCCAACAATTCTCTATGTGCGAAACGGAATTCTCAAAATATTGCAAACgcagaattattttaattccttAAGCACGCAAACTAGGTTTACGATACCATTTCACAGTTAGTTTGATCGTCACAATCAGTGTTGCCACTTGGGTATACCCAAAGAATAGAAGACTACGGTTAGTGTGTACTGCCGATTCAATTCCTCTGAGGGAGGGGAAAATTCAACTTCTGAAAAGTGTTCAGAGTAGTTAGCACGATTGCTTGTCTGAAAGCTTCctctgaaaaatatttctcgTGCCTATTTAGTTGTCCTCGTACTTTGACATCCCAGACGAACACATCTGTCACTTTGTCATGAAAAAGCTCGGTTGAAAATACTTATGCCCTACACGTTATGGCTAAATAGCTACCGTGTAAATTATCGTGTTCAAGGTTACGGTTTCTTGGTTATACTTCCATGAGGTCTCCAAGAGCTTTTATTAAAACATCGCTGAGAGAGCTTCGTCGGATAAAACTAGCTGAATTCAATGAATGGACTCTAAACCGCTCAGAAAAATATTGTACAATGTAAAAATGTCGTGTAAAAAGATAACTGCCGTATGACAAAATATAACACTTCTAAGCGCTTGGCAAACTGCTCACTTGCTTACGCTTTAACCCGGAAAAAGAAGTATTTCACAAAGAAAATAGTTTATAACAGAACAGTAAGATACTTATAAGGATGAACACTCTCTTTAGAATCAGTGAAAAGGAAATACTAGTCAACCAACAATTATACAAAATGGAAAACATAACATCGtcaacaaacacaaagaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02900 all species →	LigB	Catalytic LigB subunit of aromatic ring-opening dioxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004183 all species →	Domain	Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B	Interproscan

PANTHER

No PANTHER signature was detected for XP_058963193.2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0006725 all species →	Biological Process	obsolete cellular aromatic compound metabolic process	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06990	MEMO1; MEMO1 family protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.