Gene detail

Detailed information of XP_058964781.2 in Pocillopora verrucosa

Genomic Location: chr9:1809789...1815003
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131791448

ATGGAGAAAGAACATATCTTGAAAGATGTCTTGAAAGCCGTAGACATGTGTGTATCCGTGGGACTTTACTTTGCGAACACTCACCATGATCACGAGGCAAGAGAATTTTACAAGGAGTCGACGACGCTGTTAGAGTTCATCGAAGAATCCTTACACCAAAAAAATGCACCACGAAAGAGCGCAGCGTTTAAAAAGGACGAAGTAGATGTCTGCAAAGCTGCGGATAAAACAGTGGCGTGTTACTCTGAAAACAGCCATCGCAGCCAAGCAGCCCCAGAATTCTATAAAGAATGGTTGAACCTGTTGAGATCGGTCCAAAAGTCCTTCAGTTTAATATCAGAAGCAATACCTGAAGTAATACGAAAGACTTTGTTGGGCCCGAGAAATGAAGAACCACGAAAGGTAATAGATCACATGATAATGCTAGTACATCTTGCCCTCGCTGAGAGCGAATCGTGCCTTGGTAACCACTTGGAGTCAAAAATAAATGCTGAACTTGCTTTTGCAATTGTCTTAAATCACGAAAATGCCAGAAAAGATATAGCTCGAGCGTGTTACAGAATATTTTGGAAGTGTTTTATGAGTATTGAGCGATATGACCAAAAGATTGAATGTCTCATGAAAATGCTTGCAATTACCAAGGAAACTGGTGACACAGTAAAAGAAGCAGAGGTCTATTTCCAGCTAGGATTATGTTATTCCTTCGTAGGTCAAAAAGAACAGGCAGTAGAGTTTGTTGAGAAATCAATACAGATACGTCAGATCGATGGACACCAGGGGAGACTAGTTGATTGTTTAAACCTACTGGCAAATAATGTGCTTTCGTCAGGCCAGCAAAACGAGGCATTCGAGAGACTGCAGGAAGCCCTTCGAGTTAGCGAAGAGATTGAAGGGGGAATGATTAAATCTATAGTGCTCATAGCATTGGGACATGCTTATAAAGATATTGGTCAATACGATAAAGCAAAGGAATATTACCAGAAAGTGATTCGAGTCAGTAAGGAGTTTCATGTCCCAGACTTAGGAACATGGGCCTACTATCACAACGCTGAACTTCTCATTGAACTTCAACAATATGAGGAATCCATAAAGAGCATAGAGAAAGCCCTTGAACTCTGTGAAGAAGGCAATTTAGCAAAGCAGACCACACTCTCTAAAGGCGACATTTATATCACATTCTGTAAGATACACCTACTGCTTGGCCAACACGATAAAGCTGACGAATGTGTAAAGCAAATATTAACGGAAGATTGGCCCAAAAATAACTTGGATCGGTCTGTAAGCCTCTTTCAGTTAGGTTCCTTTTTCAGTGTAAATGGGAAATTGGAACAGGCATGTGACATTATTTCTGAAAGTATCAAATGCTATGAAAGTGGGCGTGGCCTTTTCAATGATGAGTTCAAACTTTCTGCCGGAGACATGGAACAACACTTTGAATTGTACAGGCATCATTGCCTCTTGCTTATGGCTCTGGGTAAGCCCATCCAAGCTTTGTGTACAGCAGAGAGAGGCCGTGCCCGCCTATTGGCGGAACTGTTAGCAGAGAAATATGCCATTCGAGAAGAGGCAGAGCTAAGTGAAAATGACCTCAATATACTTCTAAAGCGTCTGAATGATAATCAAATTTTAGTATTTATCGCCACTCCAAGAGGTAAAAGAATCACGTTCTGGATAATGAAGAATGATGCCACATTGGAGATGAGGAATCCAAAAGGGGCCAATCAAGATTCTCCCCTGAAGACTTATATCGAGTTATTTTCTTACGGCCGAAGCATTAACTGTGAGGACCGTTCATTGTCAGCTTTGTATGACATTCAGTATGCTGCTGATGATACCCAGCACGATGGAGTCAGGGGGAAACGTCTCCTTGAGGAGACAGACGACGAGGACCTTGAGGCTGAAAACTTACCAAATCAACTGTACAAGTCACTCATCGCTCCATTTGCTGATCGAATTCAGGGCCGAGAGCTTGTACTTGTTCCCGAGGGATCTATGGTCATGGTTCCATTTACCGCACTTCAGGACGATTCTGGAAAGTACCTGTCTGAGTCGTGCAGTATTCGCATCATTCCTTCGTTGTCAACACTTAAGTTGATTCTTGACTCCCCAGAGAATTATCACAGCCGGAATGGAGCGCTGATCGTTGGCGATCCACAAGTAAGTCATATCACACCACTTCCGCAATTGAAAGCAGCTAGGCAGGAAGCTAAAGAAATTGCTGATCTTCTGGAGGTGGAGCCTTTGTTGGGTGAGCAAGCAACGAAGGAAGAAGTGCTGCGACGAATAACGGATGTGTGTCTGGTACACATCGCCGCCCATGGTGACGCGGAAAAAGGAGAGATTGCTTGTGCACCTAACCCACCCTTCCCTCAAAACCCAACGAAGGAGGACTACATGCTGACTATGGGAGACATCGCCAAGGTTCGGATTCGGGCCAAGCTTGTTGTACTCAGCTGTTGTCACAGTGCTAAAGGAAAGATCATGAAAGCCGAGGGAGTTGTGGGGATCGCTCGAGCCTTCATTGCTTCAGGAGCTCGTTCAGTGCTGGTTTCCCTGTGGGCCGTGGATGACAAAGCCACAAAGGAGTTCATGATTCGTTTCTACGGACATGTGAAGTGTGATAAAATGAGTGCCAGTGAAGCTCTTCACCGGACCATGAAGTGGATGAGAGAATCTGAGACGACAAGGTACACGGTGAGGGAATGGGCTCCATTCGTTCTGATTGGAGATGACGTCAAACTGGACTTATAA

Transcript

rna-XM_059108798.2

TCGATTTTCACTGTTTTGTTGCTGGATGAAGGAGCCAAGTTCAGGAAAGGCATAAAACGAGGGAAGATTCAAAATTTGCTTCAATCTTAAGGTTTTTGTCAATGGTCGGCTAGAAAAACCCTTCCGCCCGAGGCATGTTCGGAAAGCGAAGATTTTCCTGCGAATCACGAAGTGCCCTCTCTCTGACTAACGCTAATCCCTCGAGCTCGGGTATTAACCATGGAGAAAGAACATATCTTGAAAGATGTCTTGAAAGCCGTAGACATGTGTGTATCCGTGGGACTTTACTTTGCGAACACTCACCATGATCACGAGGCAAGAGAATTTTACAAGGAGTCGACGACGCTGTTAGAGTTCATCGAAGAATCCTTACACCAAAAAAATGCACCACGAAAGAGCGCAGCGTTTAAAAAGGACGAAGTAGATGTCTGCAAAGCTGCGGATAAAACAGTGGCGTGTTACTCTGAAAACAGCCATCGCAGCCAAGCAGCCCCAGAATTCTATAAAGAATGGTTGAACCTGTTGAGATCGGTCCAAAAGTCCTTCAGTTTAATATCAGAAGCAATACCTGAAGTAATACGAAAGACTTTGTTGGGCCCGAGAAATGAAGAACCACGAAAGGTAATAGATCACATGATAATGCTAGTACATCTTGCCCTCGCTGAGAGCGAATCGTGCCTTGGTAACCACTTGGAGTCAAAAATAAATGCTGAACTTGCTTTTGCAATTGTCTTAAATCACGAAAATGCCAGAAAAGATATAGCTCGAGCGTGTTACAGAATATTTTGGAAGTGTTTTATGAGTATTGAGCGATATGACCAAAAGATTGAATGTCTCATGAAAATGCTTGCAATTACCAAGGAAACTGGTGACACAGTAAAAGAAGCAGAGGTCTATTTCCAGCTAGGATTATGTTATTCCTTCGTAGGTCAAAAAGAACAGGCAGTAGAGTTTGTTGAGAAATCAATACAGATACGTCAGATCGATGGACACCAGGGGAGACTAGTTGATTGTTTAAACCTACTGGCAAATAATGTGCTTTCGTCAGGCCAGCAAAACGAGGCATTCGAGAGACTGCAGGAAGCCCTTCGAGTTAGCGAAGAGATTGAAGGGGGAATGATTAAATCTATAGTGCTCATAGCATTGGGACATGCTTATAAAGATATTGGTCAATACGATAAAGCAAAGGAATATTACCAGAAAGTGATTCGAGTCAGTAAGGAGTTTCATGTCCCAGACTTAGGAACATGGGCCTACTATCACAACGCTGAACTTCTCATTGAACTTCAACAATATGAGGAATCCATAAAGAGCATAGAGAAAGCCCTTGAACTCTGTGAAGAAGGCAATTTAGCAAAGCAGACCACACTCTCTAAAGGCGACATTTATATCACATTCTGTAAGATACACCTACTGCTTGGCCAACACGATAAAGCTGACGAATGTGTAAAGCAAATATTAACGGAAGATTGGCCCAAAAATAACTTGGATCGGTCTGTAAGCCTCTTTCAGTTAGGTTCCTTTTTCAGTGTAAATGGGAAATTGGAACAGGCATGTGACATTATTTCTGAAAGTATCAAATGCTATGAAAGTGGGCGTGGCCTTTTCAATGATGAGTTCAAACTTTCTGCCGGAGACATGGAACAACACTTTGAATTGTACAGGCATCATTGCCTCTTGCTTATGGCTCTGGGTAAGCCCATCCAAGCTTTGTGTACAGCAGAGAGAGGCCGTGCCCGCCTATTGGCGGAACTGTTAGCAGAGAAATATGCCATTCGAGAAGAGGCAGAGCTAAGTGAAAATGACCTCAATATACTTCTAAAGCGTCTGAATGATAATCAAATTTTAGTATTTATCGCCACTCCAAGAGGTAAAAGAATCACGTTCTGGATAATGAAGAATGATGCCACATTGGAGATGAGGAATCCAAAAGGGGCCAATCAAGATTCTCCCCTGAAGACTTATATCGAGTTATTTTCTTACGGCCGAAGCATTAACTGTGAGGACCGTTCATTGTCAGCTTTGTATGACATTCAGTATGCTGCTGATGATACCCAGCACGATGGAGTCAGGGGGAAACGTCTCCTTGAGGAGACAGACGACGAGGACCTTGAGGCTGAAAACTTACCAAATCAACTGTACAAGTCACTCATCGCTCCATTTGCTGATCGAATTCAGGGCCGAGAGCTTGTACTTGTTCCCGAGGGATCTATGGTCATGGTTCCATTTACCGCACTTCAGGACGATTCTGGAAAGTACCTGTCTGAGTCGTGCAGTATTCGCATCATTCCTTCGTTGTCAACACTTAAGTTGATTCTTGACTCCCCAGAGAATTATCACAGCCGGAATGGAGCGCTGATCGTTGGCGATCCACAAGTAAGTCATATCACACCACTTCCGCAATTGAAAGCAGCTAGGCAGGAAGCTAAAGAAATTGCTGATCTTCTGGAGGTGGAGCCTTTGTTGGGTGAGCAAGCAACGAAGGAAGAAGTGCTGCGACGAATAACGGATGTGTGTCTGGTACACATCGCCGCCCATGGTGACGCGGAAAAAGGAGAGATTGCTTGTGCACCTAACCCACCCTTCCCTCAAAACCCAACGAAGGAGGACTACATGCTGACTATGGGAGACATCGCCAAGGTTCGGATTCGGGCCAAGCTTGTtgtactcagctgttgtcacagtgctaaAGGAAAGATCATGAAAGCCGAGGGAGTTGTGGGGATCGCTCGAGCCTTCATTGCTTCAGGAGCTCGTTCAGTGCTGGTTTCCCTGTGGGCCGTGGATGACAAAGCCACAAAGGAGTTCATGATTCGTTTCTACGGACATGTGAAGTGTGATAAAATGAGTGCCAGTGAAGCTCTTCACCGgaccatgaagtggatgagagaATCTGAGACGACAAGGTACACGGTGAGGGAATGGGCTCCATTCGttctgattggagatgacgtcaaACTGGACTTATAAAAACCATGTTTCAAATGAGGTGCAGCAAGATAAGAACACAGAAGGGAGAAGTGTATCAATTTTCTAAAATTAGATATGACTTCACCTTTCTTAAgcagttttttttgtcagttttcagaaacattttttcttcaaGGTTCTATAGGATTGTCAATGAAAGAACTGTTTTGGATATTATAAGATTATTATGTAGTAAAGCGAGTTCAATTATTTGTTAAGCTCAAACTTCTGGTATAGCTTTTAAAGTAGTTTTTCGGAACCACGGCAaggaattctttttttctatataAACAATAGTTTgatgaaatttccaaattttggctGCAAAATTAAAGAGCCATGGCTTTTTAAGGAAATTCACACAGTCGCCATATATTAATATTACGATAAACTTAAGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058964781.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.