Gene detail

Detailed information of XP_058965534.2 in Pocillopora verrucosa

Genomic Location: chr7:24238089...24242467
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131792174

ATGACATTGTGCAGCGTAGAAAGAAGTTTAAAATCCTGTTCAAAGGGTCGTTTGACTTATGACCCTCACTGGAAGCCGACAAGGGAAAACTTGGAGGAATTATCAAAGCCCCCTTCCTTGTCACTAAAGCTGTCCCTTGTTTCGCTATCATCGACCACACGTACAAGTAACAAAAGAGACGGTAATGTAATCTTCAGTGACGAATTAGCAGAATCAAAAGATATAGAGGAATCAAACCAAACCGATGGCATGTCCTCTAGCAGCTATCGATCGGACACAGAAAGCGTTTCGGAAAAAGAAACACGTGCTTCAAATGTACAAGAACCTATGCATGAGGAGTTGCTGGAGAAAGAACTTCAAGCAAGCTTCGATTGGACACATGTCGCTGTTTATAATTACGGAATGGAAAAGAAACGCCAAGCTGAAGAGGAGATAGCCACAAGAAAAAAAAAGATGGCAGAAAATTCAAAGAGATTGTGGGAGGAGAAAAATCGTTATTTACAACAAAAAGAGCACGAAAGGGTGGACGAAATGATCAAATCTGTGCAGGCATTACAGCGGGACGAGGAGAGAAAAACTGAAGAAGCCAAACAACGGCAACAGGAACTTAAACAGTCTCACGAAGCGTCGGCTGCGAGAGTTGTTAGAAAAGTTAAAGAAATGGAAGATTTAAGGTTAAGATTATTAAAAGAGGAACAGCAAGTCAAGAGAGGGCTACAACAGCTTGAGGCTTCATGCATAACTGTGAAAGAAACTGCACAAAATATAGAACAAATTTTCAAAGAATGCAAATTTCAATCATATTTGTCTACCTCTGCTTCAGACATCCTCAGTGAGACGAAGGAGGTGTTGAAGTTGTCCCTAAGCAATCTTAATAGTGCAAAAGAAAATGAGCGAGTGACAGAAGGAATTGGTGAGATTATGCAGAAATGTTTAATTCTTATTCCTGACTTGTTACAGAAAGCAAAAGAACTTGTTAATGAGGCAAATACCAAGGCTGCTAAGGATGAAGCTGATCGACAAATCAAGGAAGAGGCAAAAGCCAAAGAGGAAGAGGAAAAAAAACAACAAGCATTGAAAACTTCACAAGAAAAACAAACCGTCAGCTCCTCCACATCAAAACCAACTTCCAACTCCAGCGATCAATCAAAGACTGGGATATCAAAAGATCTTGCTTCCTGTATTTCAGCAACAGCATGGAAAGAGTTTTCCAGACTAGCAAATTACAGAAGTGCTATTGTCAAAGAAGCAGAGCCACTGAATACTGACAAGACATTGAAGCAATATAAATTTGACCTTCACAAGGCTGTCACAACACCAATCAATGCTATATCTGACCAGTCACCCCGTCACCTGCGTGATAAGATTGAGCGCTTGGCTCAATTGTTGTCTGGGCAAGCTGTACAAATGGGAGGAAAACAGATCTCAATTATCAAGCATCCTGCCGCTAAGTCATTCTGTAAAGATCTCCTTGCAAAGAAACTTGTGCAACAAGGATCACAGCAGGTTTCTTCTAGTCATAGTTCTGCATTTCCTATTGCTGCTGTTATTGTGGGAATCTGGTCCAGGTTTCCTGACATTGGTGATCTCGTTCTGGCGCAGTTCTGTGACCAGTGTCCATTCCTAGTGCCGTTTTACATACCAAGGACAGCTGAATTGACAGATGTAGAATACTTTGCATCACTTGGCTATCAGTGTTCTGAGGGTGAGATTGAAGAACAAGACAAATTTCTAAAGCGCATGACTGGCATTGTGCGACTATATGCAGCTGTTATCTCATCTCTACCTCCACAAGGACAATCCCAACAACACCCTTTTGGACTTGAAAAAGGTTGGACGTGGTTGGCAAGAATGCTGAACCTAGACCCAAGGCCTGATTACACTGCTACAGCTCTCTATGAATTCCTGGCTGTGGCAGGACATGCTCTGATGAGGCAGTACAAGAAACAATTTGGAAAACTGCTGAATATACTTGTGTTAGAATATGTGCCCAAGATAGAGAAGGTAACAGCTAAGGCACAGAGTGGACCTGTGGTGAGACTTAAAGTGTTTTTGGAAACATGTATTAAAGATCAAAAGATTCCAGTTCCGGACGGCTACCTCACTCCCAATTGGTGGCGCTCCCCAAGCTATTAG

Transcript

rna-XM_059109551.2

TGGCGGCTTCTTCAGTGCCGTTTTATCCGCGAGTTAGAGAACCTTCTCCCTCACCTAATCGTTCAACCATGACATTGTGCAGCGTAGAAAGAAGTTTAAAATCCTGTTCAAAGGGTCGTTTGACTTATGACCCTCACTGGAAGCCGACAAGGGAAAACTTGGAGGAATTATCAAAGCCCCCTTCCTTGTCACTAAAGCTGTCCCTTGTTTCGCTATCATCGACCACACGTACAAGTAACAAAAGAGACGGTAATGTAATCTTCAGTGACGAATTAGCAGAATCAAAAGATATAGAGGAATCAAACCAAACCGATGGCATGTCCTCTAGCAGCTATCGATCGGACACAGAAAGCGTTTCGGAAAAAGAAACACGTGCTTCAAATGTACAAGAACCTATGCATGAGGAGTTGCTGGAGAAAGAACTTCAAGCAAGCTTCGATTGGACACATGTCGCTGTTTATAATTACGGAATGGAAAAGAAACGCCAAGCTGAAGAGGAGATagccacaagaaaaaaaaagatggcagAAAATTCAAAGAGATTGTGGGAGGAGAAAAATCgttatttacaacaaaaagagCACGAAAGGGTGGACGAAATGATCAAATCTGTGCAGGCATTACAGCGGGACGAGGAGAGAAAAACTGAAGAAGCCAAACAACGGCAACAGGAACTTAAACAGTCTCACGAAGCGTCGGCTGCGAGAGTTGTTagaaaagttaaagaaatgGAAGATTTAAGGTTAAGATTATTAAAAGAGGAACAGCAAGTCAAGAGAGGGCTACAACAGCTTGAGGCTTCATGCATAACTGTGAAAGAAACTGCACAAAATATagaacaaattttcaaagaatgcAAATTTCAATCATATTTGTCTACCTCTGCTTCAGACATCCTCAGTGAGACGAAGGAGGTGTTGAAGTTGTCCCTAAGCAATCTTAATAGTGCAAAAGAAAATGAGCGAGTGACAGAAGGAATTGGTGAGATTATGCAGAAATGTTTAATTCTTATTCCTGACTTGTTACAGAAAGCAAAAGAACTTGTTAATGAGGCAAATACCAAGGCTGCTAAGGATGAAGCTGATCGACAAATCAAGGAAGAGGCAAAAGCcaaagaggaagaggaaaaaaaacaacaagcaTTGAAAACttcacaagaaaaacaaaccgtCAGCTCCTCCACATCAAAACCAACTTCCAACTCCAGCGATCAATCAAAGACTGGGATATCAAAAGATCTTGCTTCCTGTATTTCAGCAACAGCATGGAAAGAGTTTTCCAGACTAGCAAATTACAGAAGTGCTATTGTCAAAGAAGCAGAGCCACTGAATACTGACAAGACATTGAAGCAATATAAATTTGACCTTCACAAGGCTGTCACAACACCAATCAATGCTATATCTGACCAGTCACCCCGTCACCTGCGTGATAAGATTGAGCGCTTGGCTCAATTGTTGTCTGGGCAAGCTGTACAAATGGGAGGAAAACAGATCTCAATTATCAAGCATCCTGCCGCTAAGTCATTCTGTAAAGATCTCCTTGCAAAGAAACTTGTGCAACAAGGATCACAGCAGGTTTCTTCTAGTCATAGTTCTGCATTTCCTATTGCTGCTGTTATTGTGGGAATCTGGTCCAGGTTTCCTGACATTGGTGATCTCGTTCTGGCGCAGTTCTGTGACCAGTGTCCATTCCTAGTGCCGTTTTACATACCAAGGACAGCTGAATTGACAGATGTAGAATACTTTGCATCACTTGGCTATCAGTGTTCTGAGGGTGAGATTGAAGAACAAGACAAATTTCTAAAGCGCATGACTGGCATTGTGCGACTATATGCAGCTGTTATCTCATCTCTACCTCCACAAGGACAATCCCAACAACACCCTTTTGGACTTGAAAAAGGTTGGACGTGGTTGGCAAGAATGCTGAACCTAGACCCAAGGCCTGATTACACTGCTACAGCTCTCTATGAATTCCTGGCTGTGGCAGGACATGCTCTGATGAGGCAGTACAAGAAACAATTTGGAAAACTGCTGAATATACTTGTGTTAGAATATGTGCCCAAGATAGAGAAGGTAACAGCTAAGGCACAGAGTGGACCTGTGGTGAGACTTAAAGTGTTTTTGGAAACATGTATTAAAGATCAAAAGATTCCAGTTCCGGACGGCTACCTCACTCCCAATTGGTGGCGCTCCCCAAGCTATTAGGACAGTTTCCCAACCCGATAACTCTTGGACGTGATACAAATGTATCCACTCCTAATAATGTATTCTCCAGCCGACagttgatgaaaaagaaaaatgtattaGCTGGAGGGTGTTTCCAGTATCttgacttaaaacaaaattttctgacATTATTTAGAAGGAATGTTTAGCAGCTGGAAAGGAGAATCACAAATAAGATCAGAGTGCAAAGCTTTCTCTGAGAATAACAAGGTAGCAAGCCGACCCACAATAACATGGAAATGTTTACACTGGGGCCAATATTAGAAAAAATGAACATAACATGTACTTTTGGGTGTCTCTAAGCCACAACTTTcccagttttttattttttaattctgactTCACAGTTCAATATATTTATCACTGCACAATTTATAGCGAAAGAGCTGAAGGACAATTTAAGTGGATCTTCACTTTTTCAGCTTTGCTTCTTATTATTTTGTGATAATGCTAACAAACAACTGCAACATATCTCCAAAAGAAACCCTGCATTTTCTCTCATACTGTGCCAACAGCACTGTATGGATAATCCTGACCGATTGCTTTCtctttacctttgtttttttactcCAAGGAAAGAGCCAACAAGAAGGAAGAAACTAAACTGCATACAATAGATATGACTAGTATGTGGTTTTCAATTTCTCTAAGGTCATGAACCTGATTATGGTAGATCCATCGACCAATCAAAATCAGGTTTGCAGTCTCCGAGTCTCACAGTCATAGTGATCTGTTGTTTCAGTATTCAtttaattcaatattttcaaCTCCCCAAACTGCTTGTCACTGGGAGCCATAACCATTGGGAGAATTTGGCAGCAAGCTTGCTTTGTCATTCATCATGTTTTCTTGATGGACAGTGCGAATGTCAGattcaataataatttaaaatgaGGCCAAGTGATTTAACTCGAAACAGTGTTACTTGATAGTCAAAATATCGGTATGGTACACATGCAAGAGCTACTTTGaaagagggggtaagtttctgaacaAAATGTGGTGCTGTGTTAGTGAGAGagtaaaacaagaaaatctggttttattaactgagttgataatataaattggccaccatgaaaagtttcaaagctgatgtttcaggCATTAAACCTTTTCAGAGGGAATGATGAATAAAATTCACTCTAAACAAGGGCTAATgcttaaaatgtcagctttggaaaattatcaactcagtttataaaaccaaattatcccaCAGAATTTGTTCACTCTGAGCACCAATTCTTTGATGAATTAACTCCACCATAACTTTAATAAATATTCCTCAAGTTTGTTATTGACCAAAGCATGCACCCTTACAAGTTTCCTAATTCATGTCCAACCATATCACACCAGGACAATTTTTCTTCAGGTGACATAGCCATCATTCCTCACCTTCTGCCCATCCAATTACTACTTGACCCTACTTCTGACACTTGCCAGTAGAACGGGCataattttttggcatttttcagTGGAATGGAGGCAAGCACGAAGTGCCAGTCATGCGTGATTGGAGGagtgtaaaaaattatttttaaggtaTTCTTTCACCTTCCTCCCCTCGTTTATGACTTGTGCTTTGGGATGGCCTAATGATTGTCTCCATTTGCCTGTGAATGCAAAAATTTTATGCTTGTTTTGCAGGCTATCTGATACTGGATAGCAAAATACAATGTGGCCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07817 all species →	GLE1	GLE1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038506 all species →	Homologous_superfamily	GLE1-like superfamily	Interproscan
IPR012476 all species →	Family	mRNA export factor GLE1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12960 all species →	GLE-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0000822 all species →	Molecular Function	inositol hexakisphosphate binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18723	GLE1; nucleoporin GLE1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.