Gene detail

Detailed information of XP_058966051.2 in Pocillopora verrucosa

Genomic Location: chr6:19767862...19780659
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131792656

ATGGCGTCTAGGAATAGGGAAAATGGCACCAGACTTCGAAGAAAAAATGCAAGAGAATTAATTGGAGAGGAACGAAAGATCTCAAGTTATTACAACTTTGTTACGGACGGTGAAGAAATCGACAGTGATTTACCTGTACCAAACTTGTCCTTTGGCCTCGCATCCACCCTTGTTACCTGTGTGTCTGTCCTTTGTTATTATAATTCATGCAAAGGCGAGTTTGTCTTCGACGATTCTGAAGCAATTGTGGCGAACAAGGACTTGACGCCCGACATCCCGCTTGGAGAATTGTTTTATCATGACTTCTGGGGTGCGAACATCAGTTCCAACACCAGCCACAAAAGCTATCGTCCCTTCACTATTCTAACATTTCGATTCAATTATTGGCTCGCAGGAGGACTGCATCCCTGGGGGTTTCATGTTGTCAATGTCACACTCCATGCTGTGGTGTCAGTCTTATGTCTGAAACTCTTTTCGATCATTTTCAGTGGTAAAAATAATGTTAAATTTTATTGTGATAATAATTCATCCGCAAGAACTCATTTCACAGCCTCAAGGGCAAGTTTAGTCGGTGCGATCCTTTTTGCTGTTCATCCTATCCACACAGAGTGTGTTTCAGGTTTGGTTGGAAGGGCAGATCTTCTTGGTGCTGTGTTTTTTATCCTCTCATTTCTTTTTTATGTGAAATGTTGTTCTGTTGATTCTGACGACAATGGATCCACGTATAAATTGCCATGGAAATATCTTTTGTCAAGCATGGTATTTTGCTGTATAGCTATGCTTTGCAAGGAGCAAGGAATCACTGTTCTGGGAGTCTGTTGTGTTTATGATTTAATTGTGGCTTGTGAAATCGACCCTGCCTCTCTCTTGACGAAAGTCTCCTCAAAGGTCTCTTCACCTGAGAAGAGAAATGGAGTTGATTCAAAGGAGAAAAATGAATCAACCTTCTGGATAAAGCTTATTTATCGCCAGATAGTCCTGTTCCTTGCCGGAATAACTCTTCTAGTCGGTCGCTGGCGCATCATGGGGTCTTCTCCTCCAGTTTTCCAAGTAGTGGATAATCCTGCATCCTTTGAGGAGTCTCTTATTATGAGAATCATCAACTACAACTACCTGTACGCTATCAATGCGTGGCTCCTTATTGTACCACAATGGCTGTGTTTTGATTGGTCCATGGGGTGCGTGCCGTTGATCAACTCCTTGTCTGATCCGCGCATGCTTTGTATCGTCGGTCTGTGGACAGTGTTACTGGTGCTTATCGCTTACTGTGTTTTCGGGAAGAGTTTACCAAACAAACGGATTCTGACGCTGGGATTAGCCTTCGTGGTTGTACCGTTTCTTCCTGCGACGAACATCTTCTTCAGAGTTGGTTTTGTTGTGGCTGAAAGAGTTCTGTATCTCTCTAGTATCGGTTCCTGTCTCCTCACTGTCCTCGGGTTTACTTTGCTAAGCAAGTTCCCACTGGGAAAGAAGGTTATAGGATTCGGCATGGTCTTGCTCATAGCTCTGTATTTGTCGCGAACAATACAGAGATCAGCTGAATGGATAAATGAAGACACGTTATTTACGTCTGGATTGTCAGTTTGCCCGCTTAATGCTAAGGTGCACTATAACGTTGCTAAAGTACGAGGAGAAAAGGGACGAATTGAAGATGCCGAAGCATTTTATAGAGAAGCTATCAGGTTGAATCCAACGTATGATCAAGCGTTTAATAATCTGGGAAACCTAATAAAGGACAACGGCAGATACGAAGAGGCAGAAGCACTTTTGGAGAAAGCTGTAGAAATTAGGAATGATTTTGCCACTGGTTGGATGAACCTTGGAACTGTCAAAGCAGCTCTGCAAAAACCCGATGAGGCAGAAAAGTGTTACAGCAATGCCATACGCTACAGACGGAAATATCCTGACGCATATTTCAATCTTGGAAATCTGTACATAGACCAAGAAAAGCACAAAAAAGCCATTGTAGCGTTTAAGATGGCTGTCAATATAAAGAACAATCACGTGGGCGCGTGGATGAATCATGCTTTGCTATTGGAGAAGTCAGGTAATAGAGATGAGGCGATATCTGTTCTTCTGGAAGCAAAAAAGTACATTGGCAATGAATCAACAGTTTACTTCAACCTTGGTAACATGCTGGGACAGAACAACAAATTCCAGGAGGCCGAGCAACAGTTTCTGGAAGCTCTCAAATTAAGCCCAAATTCTGCTGAAATTCATGGCAATCTAGGTGTGTTATACCACAGATGGGGAAAACACAGCAAAGCAGAGAAATGCTACACAAAGGCATTGCAGTTGGATCCACAAAGCGAAAATGTGCACGAAAACCTTGAAAAACTAAAAAGAACGAAACGGCATTTAGCCAACGGAAGATCCAAAGGGCGATGA

Transcript

rna-XM_059110068.2

TCGTAAATCTGCAAAACGTACCCCTCCCTAGAGAATATTTTTTGTGCGGATAAACATTTTAATTGTACGCGCTTTGTTTGAAAATGGCGCGTTACGCCCGCTGGAAATATTAGGTTAAAAAGTTGCTAAATTAGCCTAGAAAGAAACCCGTTTCATGGCGTCTAGGAATAGGGAAAATGGCACCAGACTTCGAAGAAAAAATGCAAGAGAATTAATTGGAGAGGAACGAAAGATCTCAAGTTATTACAACTTTGTTACGGACGGTGAAGAAATCGACAGTGATTTACCTGTACCAAACTTGTCCTTTGGCCTCGCATCCACCCTTGTTACCTGTGTGTCTGTCCTTTGTTATTATAATTCATGCAAAGGCGAGTTTGTCTTCGACGATTCTGAAGCAATTGTGGCGAACAAGGACTTGACGCCCGACATCCCGCTTGGAGAATTGTTTTATCATGACTTCTGGGGTGCGAACATCAGTTCCAACACCAGCCACAAAAGCTATCGTCCCTTCACTATTCTAACATTTCGATTCAATTATTGGCTCGCAGGAGGACTGCATCCCTGGGGGTTTCATGTTGTCAATGTCACACTCCATGCTGTGGTGTCAGTCTTATGTCTGAAACTCTTTTCGATCATTTTCAGtggtaaaaataatgttaaattttattgtgataaTAATTCATCCGCAAGAACTCATTTCACAGCCTCAAGGGCAAGTTTAGTCGGTGCGATCCTTTTTGCTGTTCATCCTATCCACACAGAGTGTgtTTCAGGTTTGGTTGGAAGGGCAGATCTTCTTGGTGCTGTGTTTTTTAtcctctcatttcttttttatgtgAAATGTTGTTCTGTTGATTCTGACGACAATGGATCCACGTATAAATTGCCATGGAAATATCTTTTGTCAAGCATGGTATTTTGCTGTATAGCTATGCTTTGCAAGGAGCAAGGAATCACTGTTCTGGGAGTCTGTTGTGTTTATGATTTAATTGTGGCTTGTGAAATCGACCCTGCCTCTCTCTTGACGAAAGTCTCCTCAAAGGTCTCTTCACCTGAGAAGAGAAATGGAGTTGATTCAAAGGAGAAAAATGAATCAACCTTCTGGATAAAGCTTATTTATCGCCAGATAGTCCTGTTCCTTGCCGGAATAACTCTTCTAGTCGGTCGCTGGCGCATCATGGGGTCTTCTCCTCCAGTTTTCCAAGTAGTGGATAATCCTGCATCCTTTGAGGAGTCTCTTATTATGAGAATCATCAACTACAACTACCTGTACGCTATCAATGCGTGGCTCCTTATTGTACCACAATGGCTGTGTTTTGATTGGTCCATGGGGTGCGTGCCGTTGATCAACTCCTTGTCTGATCCGCGCATGCTTTGTATCGTCGGTCTGTGGACAGTGTTACTGGTGCTTATCGCTTACTGTGTTTTCGGGAAGAGTTTACCAAACAAACGGATTCTGACGCTGGGATTAGCCTTCGTGGTTGTACCGTTTCTTCCTGCGACGAACATCTTCTTCAGAGTTGGTTTTGTTGTGGCTGAAAGAGTTCTGTATCTCTCTAGTATCGGTTCCTGTCTCCTCACTGTCCTCGGGTTTACTTTGCTAAGCAAGTTCCCACTGGGAAAGAAGGTTATAGGATTCGGCATGGTCTTGCTCATAGCTCTGTATTTGTCGCGAACAATACAGAGATCAGCTGAATGGATAAATGAAGACACGTTATTTACGTCTGGATTGTCAGTTTGCCCGCTTAATGCTAAGGTGCACTATAACGTTGCTAAAGTACGAGGAGAAAAGGGACGAATTGAAGATGCCGAAGCATTTTATAGAGAAGCTATCAGGTTGAATCCAACGTATGATCAAGCGTTTAATAATCTGGGAAACCTAATAAAGGACAACGGCAGATACGAAGAGGCAGAAGCACTTTTGGAGAAAGCTGTAGAAATTAGGAATGATTTTGCCACTGGTTGGATGAACCTTGGAACTGTCAAAGCAGCTCTGCAAAAACCCGATGAGGCAGAAAAGTGTTACAGCAATGCCATACGCTACAGACGGAAATATCCTGACGCATATTTCAATCTTGGAAATCTGtACATAGACCAAGAAAAGCACAAAAAAGCCATTGTAGCGTTTAAGATGGCTGTCAATATAAAGAACAATCACGTGGGCGCGTGGATGAATCATGCTTTGCTATTGGAGAAGTCAGGTAATAGAGATGAGGCGATATCTGTTCTTCTGGAAGCAAAAAAGTACATTGGCAATGAATCAACAGTTTACTTCAACCTTGGTAACATGCTGGGACAGAACAACAAATTCCAGGAGGCCGAGCAACAGTTTCTGGAAGCTCTCAAATTAAGCCCAAATTCTGCTGAAATTCATGGCAATCTAGGTGTGTTATACCACAGATGGGGAAAACACAGCAAAGCAGAGAAATGCTACACAAAGGCATTGCAGTTGGATCCACAAAGCGAAAATGTGCACGAAAACCttgaaaaactaaaaagaacGAAACGGCATTTAGCCAACGGAAGATCCAAAGGGCGATGAGATAaacgagaaaaattatttttgtatacGGTTgtatattttgttaaatttctaGATCTGGTCCAGGTTGTTTGAAGTAATATATCAAACACGAGGAAGAGTGTTTCATCCGATATCTAAACACCGAGAAGTGGTTGAAAaaacgaggcgcagccgagtttttgttttaaccaaCTTCAAGGTGTTTGGATATCGGATTAAACAACCTTTCGAATGTTTGATATAGCTTCTCAAACCATTGataattcttggagaaaatcaaagcaaaagttcaccaaattttatgataattaagatcACATATCCAAACCTCCTTCAcggttgtaatttcctttgttttctcagcatgaattagtaatgagtttgagaagggtagataacgctatccactggatggCCAGTATCCACCAGATCCAGCTTTCAGTgcgttttgttaacacttatccgttggatagcgatttatccgttggatagagttatccgccctttatacaactggacCCAGTTTAACGTTTTACTTTTTGTGAGATCTCAAAGTTAATTTGAGATTGCACAGCTTTCGCTGCTCAGTTGGGTAAAATGCATGGTTACCTTCAAGTTTTGGCAACTTTGAAACAGATTTATTGTTGTGCACTTATTATTAGTTTTTTCATTGAATAGCATGTAATGCTGACTTATTTATCTTtagtcaaatttttttctcgaataAAACGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR052346 all species →	Family	Protein O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44227 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.