Detailed information of XP_058967037.2 in Pocillopora verrucosa

Genomic Location: chr9:20256024...20274044
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →
zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR039804
all species →
DomainListerin, zinc finger, RING-typeInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR011016
all species →
DomainZinc finger, RING-CH-typeInterproscan
IPR039795
all species →
FamilyE3 ubiquitin-protein ligase listerinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12389
all species →
ZINC FINGER PROTEIN 294Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0043023
all species →
Molecular Functionribosomal large subunit bindingInterproscan
GO:0061630
all species →
Molecular Functionubiquitin protein ligase activityInterproscan
GO:0072344
all species →
Biological Processrescue of stalled ribosomeInterproscan
GO:1990112
all species →
Cellular ComponentRQC complexInterproscan
GO:1990116
all species →
Biological Processribosome-associated ubiquitin-dependent protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22377LTN1; E3 ubiquitin-protein ligase listerinEC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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