Gene detail

Detailed information of XP_058969617.2 in Pocillopora verrucosa

Genomic Location: chr4:12498044...12501036
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131795992

ATGGCGGATAGACAGAACACCTCTGGAAATGAGACGATATTAGTCAGCTCTGGTGATGAAGACGAAGATGAAGACGTCGAGGGACTTTTTAAAGAATTTGTTTCCAAAGTTGAGAGATGTGTAGACCAAAACGATGTGGTGCTTTTCCTGAAGCTGAAATTCGCGGAGGCTCGGTCCGAGTTCGTGTCATCCGTGAAATTCAAGAATGCTCTGAAATGGAGGACGAGAGAAATGAACAAGTCAAATGGCTACATTTATACTGGAGATATTTGTAAGCTTCTCTTGCCAGATTCAAAGGTGGATAATGTTGACGAAAAAGCCAATGATGTACATTTCGCGGGAAATGGACAAGCAGTGAGTCCCTTCACTCGCGTGGAAGGCGACGTAAACAGAGCGATCGAACTGACTGTAGTGGACAGTGAACCAGGCTATCTCACAACAGATAAGGGGGCGAAACTTCCCGAGACTGCTGTCCCCTCAACGAGCAGCACAAGCTCTATTCAACCTCCTTCAAGTGGTATTGTTAATGGAAGAATTAATGAGAAGAAAAGACAAATGGCAAGTCCTTCGAAACAACCGCTTACCCCTAGAAAACGAAAGAAGCTTGTCAAAAGAATGGAATTGAAGCTTAAGAACCTGGCAGAGAGAATTCAGATTTTAAATCAAGCAGAGTTGAGTTTGGATGAAATGGATATGAGTGACAGTACATATATTCAAGAATGTCGTCTGAAAGAGAAATTTAATCAAATCTGGAACAAGATCTGTAGAGTGCAGGGAAAACCCCCCAACACAGGAAGGGTAACAGAGAAAGAAGTCAAGTGCCCAACCACGGGCCTACCAGGGATAGACCATGCCATAAAAAAATTCATAAAGAATAAGAAAGGTCGTTTTCCTGATAAGTTTGACATCAGTAATGTAATACAAGAAGCAAACAAAAAGTATGGCTTGAAACTGTCAACACAAGCTCTCAATGAGATCAGTGATGAAGTGTTCATGTGTATAGGTAACATTCTACAGAAGAGACGGAAGAGAGATTTTAATTTCAATTTTGGATGTCACCTCACAGATGATTGTAATGCCAGTAATGACCCTGCCATAAATGACTTAGCACTTCGCAAGAAGTTGGAAGAAAACAAGAAGGTCAACAAAAAGAATCTAGATGAAGTTTTTACAAAGTTTGTGCGCTATGGACGCATGAAAGCTCATGATAGCACTGATACCTCAAGCAGCAGTGATGTTGAGGAGGAAAGACCTGATAAGAGTGACAGAGTCACAATGAAAAAGAGATTCTCTTGCATTTCTGTCACACAATCATCAGATTCTAGTGAAAATGAATGCAATGACTTTGGGTTGACAGAAGGTATGAATGACAGCACAAAAAAGATCAGAAGGGAGGAAGGGTTTGATGACGATGAAAGTGACTTGCAAAACTTTTCCATGAAGTCTCCTCATCAACTAAGAGGAAAGAAGAAAGAAACAGAAACTGAGACTAAACTTGACATGGAAAACAATACTCCATTGCAATCAAATGATAGAAATCTGTGGGAAAACTCTGCTATTGTTGAGTTACCTACCTCAGCTCTGTCTGAATGCAATGAAATTTGTGTGAAACACAAAAATATAGTGAAAATGGATGGTGCCTCTCAACCCTCTGTTGTTGAAATTTTGGAGCAAACAGGCACTAGTGGGAAAGAGAATACATTACCTGATCAGCCTGCTGTTATAGCACCAGAAAGGATTAACAACAGTGCAGTATCCACAAATCAGCAACCTAACGATTCTAGCCCAAAATCAGATCGTTATATTGTCTCTGCAATTAAGGAAGATCTAACAACCGAACCAGTAGAGACTTCTTCTAAGTCTTCAGTGACTAATAATTCCCCAAGTCATGTGATATCAAGTGTTGATGATTTGTCATTGCAGGAGACTAAGCCTTCCTCCAGTACAAAATCAGATTCTCATGTTATCACTGTTGATAAGGAAGGTCTGACAACTGAACCAGAAGAGAATTTTCCTGAATCCAAAGAGAGTAGTACTTCCTCAAGTCATAAAGTATCAAACATTGACAATTCTTCTTTGCATTTGACAAAGTCTTCTCTTTCCAGTGTTAAATCAGATCCTAATGTTATCACTTTAATTGAGGAAGAGCTAGCTGCTAAACTAGTAGAGACCTTGTCTGAATCTCAAGAGACCAGTACTTCCCCAAGTCGAGTAATCTCCAGCTCTGAAGATTCTTCAGTGCAGGACACAAAGTCTTTTCTAAGACCTGTACTGTCAACTATTAAAGATTTTGATGATAAGGCACAAGATGTGATTGGCAATGTAACTGGTTCTTCTTTTCATTCTGATGTTGACAACAGAGAAGTTGTTGCTGGAAAATCTCCAAAGGAAAATGGTTCTCATGATGATGCACCAAAGTCCACTCCATCTAGGAAAAGAAAAGGTGTAAACTTTACTTTATCACCTCTTACTGTCAATATTAAACCTATATCAATTAAAGGTCACAGGATTTTCCCCAAGAAGAGGAAAGCAGAGAATGGATTGCTTGATTTTGAAAGTCCACTGAAAAGTTTCTGTGAAGCGACTTTGGAAATTAGAGGAAATGAGCCATCTTCCTCTTGTAACCTCCCAGAGGCCATAAACAATAAATTAAATTTTGATTGCAACAATAGATTATCAAAAATTGAAAAGGATGAACCTTCTGTTTCTTTTGCAAACAGCCCACCAGACCAAAGTATCAATAGTGATAAGTCTGGTATTGAAGCAACAGCATCAAAGAGATTGCTGCTTTCTTTGAACAAGATGGGAAGAAATTCTCCTATCAAGAAACAGGAAACTTCTGAAAGGACAGTTATCTCCATTGTACTCTCAGATGATGATGACAGTGATTGTGAAATAATCAAGTGA

Transcript

rna-XM_059113634.2

AAACGTGAATGTAACATGGCGGATAGACAGAACACCTCTGGAAATGAGACGATATTAGTCAGCTCTGGTGATGAAGACGAAGATGAAGACGTCGAGGGACTTTTTAAAGAATTTGTTTCCAAAGTTGAGAGATGTGTAGACCAAAACGATGTGGTGCTTTTCCTGAAGCTGAAATTCGCGGAGGCTCGGTCCGAGTTCGTGTCATCCGTGAAATTCAAGAATGCTCTGAAATGGAGGACGAGAGAAATGAACAAGTCAAATGGCTACATTTATACTGGAGATATTTGTAAGCTTCTCTTGCCAGATTCAAAGGTGGATAATGTTGACGAAAAAGCCAATGATGTACATTTCGCGGGAAATGGACAAGCAGTGAGTCCCTTCACTCGCGTGGAAGGCGACGTAAACAGAGCGATCGAACTGACTGTAGTGGACAGTGAACCAGGCTATCTCACAACAGATAAGGGGGCGAAACTTCCCGAGACTGCTGTCCCCTCAACGAGCAGCACAAGCTCTATTCAACCTCCTTCAAGTGGTATTGTTAATGGAAGAATTAATGAGAAGAAAAGACAAATGGCAAGTCCTTCGAAACAACCGCTTACCCCTAGAAAACGAAAGAAGCTTGTCAAAAGAATGGAATTGAAGCTTAAGAACCTGGCAGAGAGAATTCAGATTTTAAATCAAGCAGAGTTGAGTTTGGATGAAATGGATATGAGTGACAGTACATATATTCAAGAATGTCGtctgaaagagaaatttaatcaaATCTGGAACAAGATCTGTAGAGTGCAGGGAAAACCCCCCAACACAGGAAGGGTAACAGAGAAAGAAGTCAAGTGCCCAACCACGGGCCTACCAGGGATAGACCATgccataaaaaaattcataaagaaTAAGAAAGGTCGttttcctgataagtttgacaTCAGTAATGTAATacaagaagcaaacaaaaagtaTGGCTTGAAACTGTCAACACAAGCTCTCAATGAGATCAGTGATGAAGTGTTCATGTGTATAGGTAACATTCTACAGAAGAGACGGAAGAgagattttaatttcaattttggaTGTCACCTCACAGATGATTGTAATGCCAGTAATGACCCTGCCATAAATGACTTAGCACTTCGCAAGAAgttggaagaaaacaagaagGTCAACAAAAAGAATCTAGATGAAGTTTTTACAAAGTTTGTGCGCTATGGACGCATGAAAGCTCATGATAGCACTGATACCTCAAGCAGCAGTGATGTTGAGGAGGAAAGACCTGATAAGAGTGACAGAGTCACAATGAAAAAGAGATTCTCTTGCATTTCTGTCACACAATCATCAGATTCTAGTGAAAATGAATGCAATGACTTTGGGTTGACAGAAGGTATGAATGACAGCACAAAAAAGATCAGAAGGGAGGAAGGGTTTGATGACGATGAAAGTGACTTGCAAAACTTTTCCATGAAGTCTCCTCATCAACtaagaggaaagaagaaagaaacagaaactgAGACTAAACTTGACATGGAAAACAATACTCCATTGCAATCAAATGATAGAAATCTGTGGGAAAACTCTGCTATTGTTGAGTTACCTACCTCAGCtctgtctgaatgcaatgaaaTTTGTgtgaaacacaaaaatataGTGAAAATGGATGGTGCCTCTCAACCCTCTGTTGTTGAAATTTTGGAGCAAACAGGCACTAGTGGGAAAGAGAATACATTACCTGATCAGCCTGCTGTTATAGCACCAGAAAGGATTAACAACAGTGCAGTATCCACAAATCAGCAACCTAACGATTCTAGCCCAAAATCAGATCGTTATATTGTCTCTGCAATTAAGGAAGATCTAACAACCGAACCAGTAGAGACTTCTTCTAAGTCTTCAGTGACTAATAATTCCCCAAGTCATGTGATATCAAGTGTTGATGATTTGTCATTGCAGGAGACTAAGCCTTCCTCCAGTACAAAATCAGATTCTCATGTTATCACTGTTGATAAGGAAGGTCTGACAACTGAACCAGAAGAGAATTTTCCTGAATCCAAAGAGAGTAGTACTTCCTCAAGTCATAAAGTATCAAACATTGACAATTCTTCTTTGCATTTGACAAAGTCTTCTCTTTCCAGTGTTAAATCAGATCCTAATGTTATCACTTTAATTGAGGAAGAGCTAGCTGCTAAACTAGTAGAGACCTTGTCTGAATCTCAAGAGACCAGTACTTCCCCAAGTCGAGTAATCTCCAGCTCTGAAGATTCTTCAGTGCAGGACACAAAGTCTTTTCTAAGACCTGTACTGTCAACTATTAAAGATTTTGATGATAAGGCACAAGATGTGATTGGCAATGTAACTGGTTCTTCTTTTCATTCTGATGTTGACAACAGAGAAGTTGTTGCTGGAAAATCTCCAAAGGAAAATGGTTCTCATGATGATGCACCAAAGTCCACTCCAtctaggaaaagaaaaggtgtaAACTTTACTTTATCACCTCTTACTGTCAATATTAAACCTATATCAATTAAAGGTCACAGGATTTTCCCCAAGAAGAGGAAAGCAGAGAATGGATTGCTTGATTTTGAAAGTCCACTGAAAAGTTTCTGTGAAGCGACTTTGGAAATTAGAGGAAATGAGCCATCTTCCTCTTGTAACCTCCCAGAGGCcataaacaataaattaaattttgattgcaacaatagattatcaaaaattgaaaaggatgaaccttctgtttcttttgcaAACAGCCCACCAGACCAAAGTATCAATAGTGATAAGTCTGGTATTGAAGCAACAGCATCAAAGAGATTGCTGCTTTCTTTGAACAAGATGGGAAGAAATTCTCCTATCAAGAAACAGGAAACTTCTGAAAGGACAGTTATCTCCATTGTACTCTCAGATGATGATGACAGTGATTGTGAAATAATCAAGTGAATTTTTGTGGTGTGTTCTGTTTCAATGTGTTAGTGTccaaaaatttttattaaagctCTTAGGTTGCTGGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20920 all species →	DAXX_hist_bd	Death domain-associated protein 6, histone binding domain	Domain	Interproscan
PF03344 all species →	Daxx	Daxx N-terminal Rassf1C-interacting domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046378 all species →	Domain	Daxx, histone-binding domain	Interproscan
IPR031333 all species →	Domain	Daxx, N-terminal Rassf1C-interacting domain	Interproscan
IPR046426 all species →	Homologous_superfamily	Daxx, histone-binding domain superfamily	Interproscan
IPR038298 all species →	Homologous_superfamily	Daxx, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12766 all species →	DEATH DOMAIN-ASSOCIATED PROTEIN 6 DAXX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0050681 all species →	Molecular Function	nuclear androgen receptor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058969617.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.