Gene detail

Detailed information of XP_058970969.2 in Pocillopora verrucosa

Genomic Location: chr2:1527567...1532017
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059114986.2

CGGCTACCAAGTCAGATGTTTACTTTCCGCTTTTCTACCGCTCAGGTGTTGTCTTTTCACGCCATGAACCTCAGATGGGATTTAAATTTCTCTCCAAGATAGCAGTGGCACTCGGCATAGCTTTAGTTATCGTAGTCCTTttggaatttgttttgttaatttcttATGTAAAGGAAACCGATGCAGATATTTTACCAAACGCTGAAGAGTCATCAATTAGTTACGATGGTATTAATAATCATGTCACGACAGTCCACGAAGCAGTCCCatcgaaaagaaaatcagaacCTGAAAGGGAACAGATCAACTATAAACCGACTAAAAGAATATTTACCTCACTCTCTTCTAATATCCACGTAAGTTCTGTGATTTGTGGAGAGCGGTCTGTGGAAGCAACAACAATGCTCAAGTCAACCACTTTATTCACAAATAGAACTATACAATTTCATGTTGTTGCAGAAGATAACCTTCATGCTGaactaaaaaacattttcagggaATGGTCCTCTGTTAAATCTAGTCAAGTCTTATTAAAACTTTACTCTTTACACTTTCCTCCTGGAGAAAATGTTGAGGTGTGGAAACGACTTTTCAAGCCATGTGCAGCACAAAGATTATTTCTTCTGGATGTTTTGCATTCTGTTGATAGTGTCCTGTATTTAGACACTGATGTTCTCATGCTCAGACCAGTGGAAAATCTTTGGGACCATTTTAACCATTTTGATGATAAACAGCTTGCCTCAATGGCTCCAGAGGGTGAAGAAAAAGCACTCTCCTGGTATCCAAGGTTTGCTCGTCATCCTTTTTATGGGAAAAATGGAATGAACTCTGGAGTAATGCTCATGAACTTGACACGAATGCGGGAATTTGACTGGACTAAAAAGATTCTAGAAGCATACCATAAGTACAAACTCAGCATAACATGGGGAGACCAAGATCTCTTGAATATTGTCTTCCATGATCACCCTGAGTTACTATACACATATACATGTGATTGGAACTATCGTCCAGACCACTGCATGTATGGAAACAATTGTGGGCCAGCCAGCAACAAAGGCATTTCAGTAGTTCATGGTAACAGAGGGGTATACCACAATGACAAGCAACAATTCTTTAAAGCAATTTACATGGCCATGAAAGACTTTAAACCtggtgatgacagaaaattgCTGCTGAAGAGTTTGGAAGGAAATTTGAATGCTGTGTCTGACCCTTACTGTGGAGCTATGACtgaaagtattttaaaatatcccAGACTTTTTTTAGATTGAGTATTTCTTTCACAAGActttaaagtttcaaaataaaaatgtcttttgattattttatggCAGTGCTATGAGAACTCTCTGCAATTTACTTCAACCCCTTCACCCAGAAAATCTAATTATAAATTCTCTGCACAGTCATCTATATGTTTCTTATCATTTGAGCTCTGAGAATGTGGTATTTAATCAAATGTAATACTctagttgatatttttgtcttcttccCACCTCTTCGCTGGCAATTTTATCAATGACATCAGGAGAATCTCATTTTTGGTCACTCCTGCTGGTGAAAGGGTAAATAAGACTTCTCATATTATAGTTTTCTCTAGAGTATGGACCCCCTCCTCTATATCTTTGTCAAGTAGGTGAAGAACTTTAGCACTTAATAATGGTAACTGAACTGAGTgaagtgcaatttgggctgaaatcatacgtgtgatttcaaaattgaacgagcgtgCAGtgcaagtttgatttgaaatcacaagtatgatttcagaccaaaatacatccattttgaaattgctcaagtacaggacttggtcagttcaaatatatgatgcaCTACTGAGCTGGtgtgaaattaaattgatccattttttggtgggaaaaagtaagagttttggaaacaaaagttgcaaaatctGCCTTGATACCctttatctttcatttttctgcaatttgattggttactttaaacaagccttgaaatctgattggttgttttgttattagtgtagcctcctcattagctgggaaaaagatgcaatttaaagtttaaaaatggtgcaattcatGAAGTAAATTGATTGCGAGTTATCagaaatgaaagattttaaaaatccaaaattattCCATGGCCTCTTAGTATTTTAGAAGGAGAGTTCTAATTTCTTGATTATAGAATGAATTAGACAGGTATTGAGAAATAACTTAAACACAAATTTTTCTCCACAATAGCCA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006031 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01501 all species →	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR002495 all species →	Family	Glycosyl transferase, family 8	Interproscan
IPR051993 all species →	Family	Glycosyltransferase 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46012 all species →	IP22168P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0035252 all species →	Molecular Function	UDP-xylosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13676	GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase	EC:2.4.2.42	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.