Gene detail

Detailed information of XP_058971249.2 in Pocillopora verrucosa

Genomic Location: chr6:18673697...18687008
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059115266.2

TcgattcaagatggcggagaaCGGTGAAATAGCACCTCTTCTCAACAAGAAATTTGAACACTCTGGTGAAGAATTGACTGGTTGTGGAGCCACAGTGTGCTGTGATCCTAGAAAAGGTGTCCATCGCTACTTTGTCCTTGGGTTGATATGCTTCTTGAGTTTTGGAAGTTACTACTGCTATGACAATCCAGCAGcattagagaaaaatattgaactgGACATGAATGTTCCCACACAAAAATATGTGTTGTTATACTCGCTCTATTCATACCCAAATGTAGTGTTATGTTTCTTTGGTGGATTTCTTCTGGACAGAGTCTTTGGTGTGAGGCTTGGCACCATTATCTTCAGTTTATTTGTCTTAAGTGGTCAGATTGTGTTTTCTCTGGGAGCTTACATCCACAGTTTTACAGTTATGGAGGTGGGCAGGTTTATATTTGGGCTTGGAGGGGAAAATTTGGCAGTGGCCCAGAACACTTACTCTGTGAACTGGTTCAAAGGGAAGGAGTTGAATATGGTGTTTGGACTTCAGCTAAGCTTTTCAAGAGTGGGCAGCACAATTAACATGAATGTAAACAACCCAATTTATAAGTCATTTTCAAGTTATGTCCCCGCAACAAAGAGCTACCAGGCTCTGGGAATGACCTTGTTTGTTGGAGCTGGTGTTTGCATGTTTTCTCTTGTCTGTGGGTTGGTACTGGGTTTTCTGGACAAGAGAGCAGCTCGCATTCTGAAGAAAGAAGATAGTCAAACAGGTGAAGTCATTCGTTTGTCAGATGTCAAAGACTTTCCCCTTAATTTGTGGCTAATATTTATTATCTGCGTTGCCTACTATGTGGCTATTTTTCCATTTATAGCACTTGGCCTtgCATTTTTTGAGGCAAAGTTTGACTTGAATCCCACCAAAGCAGGAGCAGTTAACAGTGTGGTGTTTATCATTTCCGCCTGTGCCTCTCCATTCTTGGGCTTTATGGTGGATAGAGTTGGAAAAAATATCTTCTGGGTAATTTTATCAGTGGCTGTAACCCTTGGCTGCCATTGCTTGATGGCTTTCACTTTTTGTAACCCATTTGTCGCTATGAGTATACTGGGTGTGTCTTACTCCATGTTGGCCTGTGCTCTGTGGCCGCTTGTTGCTTTAGTTGTCCCTGAACATCAGTTGGGTACTGCCTATGGATTCATGCAGTCTATTCAGAATCTGGGACTTGCAGTTATTTCACAAGTAGCTGGAACTATTGTAGACCTTAAAGGATATTTAGTATTGGAAGTGTTTTTCTGCGCCTGGTTGTGCATTGCCTTGATTGCCAGCATTCTGCTCTACTTGGTTGATGCCTCCAGagGGACAGGCCTAAACCTCTCCACcctagaaagaaagaaattagcAGCTCAAAGCAGAGTCACACTTATTTCGTCAGAAGAGGAAGACATTCACAAGAGAGACTATAATGTGAGTCCAATCACTCCTCGCTCTGCAGCTCAGCTGCGGTTGCGCTTTTTGTCACGAGTAGGCCAACAGTACTTCCAGCTACCAGAGACCTACAGAGCTTCGGCACTGGCTTATCCTCATGTACTTAAGTGATCAGTCACCTACTTTCAGTGCAAGAATGAGCTCCTCACAGGCGGTGTCAATTTGAAGGACTGGGTTACAATATTTGAGGCGAAAGATGCGTTACCATGTTATTTTGATGGTGGATCTCGTATTAGTTTGCCAGATTCATTCTCATGCAAGCTTTAGAATGATTTAGAATTATATCGGCGAGATATACGCAAGTAACTTCCATAATTATTTAGTTAAAGGAGACTCATTTGAGAAATTTATACCTCCTTTACacctatttcccttttttttcggtttttatcAAAGGTTATTTTGTATCGTTTGGGCTAGTCTAAATTTTTTGCTGAATTGCAAGACAGAATCACCCTAAATAACAAATGTATCGTTACCTAATTCAATAATGTGACGCAGAATCCTTAATTTGATGCAATGGACCTTCAAAGTGCAGTTATTTGTATTGATTAGcgcaattttttaatgaattgtcGAAAGTCAGCCAGGATTGCATTCGCTTTGCcttgattggtctagaaaactcgcgtcactttcttaaccaatcagatgcaaaactgaaaccgaTCACGACAtggtcgctcgcgttttcccgcgctttgtaATTAGGAATTATTGTAACTACTTAAAATAAAGCGattttcttacttattttggAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR052187 all species →	Family	Major facilitator superfamily domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23512 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058971249.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.