Gene detail

Detailed information of XP_058972197.2 in Pocillopora verrucosa

Genomic Location: chr8:13541679...13557156
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059116214.2

GCTGGTcgatgctaaaaaaaaaaggattttaaatgCTTTCAAGATTCATTCGTCTTTAAGCTTAAGTAATGAATTCGTAACCACAAAATACGAGTAAGGCATACATATGTACATAatgatgtttattttgaatgAGAGATTCAtcttttaaacactttttcTCTCTGATGTATAACAAAAACATCTCTACAACAGACGACGAGAGAAATAATTATGATCAATTGATGGCAGGCCATATCACGAACGttccaaacaaataattttttatatcCGATTTTCCTCAACCGAATTTCTTAATCAAACCATCCTCTGTTCCTACAAACGCGAAAATCTGTGTGAAAGACACGGTTTTCAGAGGTTGATAGTAAAATCTATTTCAACGGATGCTCATCTACTTTGGACCTTCAAGGCAGCCCAAATTATCCACGGTCATTGCATCAAATTTCTTCATGCGGAAAAGGTAAAATTAATACATACCACTATCAATTGGACGACATGTTCCCATATGAAGTTAAGCACACAGCAAGCGCTAGCAGTCACGCATCCCCCTTGCAACAATTTACTCACAAGTCCTATAGTCATATGGTTCAGGTCACAGTCGTGTGCTTTCCGCCATCTCTCTATCAGCTGTCTGCGTTCTTCCGAACCTTGGACGCATGCGCCTGGCGAGAGTTCAATATGGCGGCATATTTGGTTTGCTTGACGACTGATGGCGGCATTCCACTGTTCACTAGAACGAAAGGAAACCTCCCACAGTTGCCTTTTCCTGTGATTGGATCACTTAATGGTGTGTGCATGTTTGCCAACAATCAAGATGTCACTTTGCTTAACACAGTCACGGATGATGCTAAAGTTGTCTGGAAGGTTTTTAATGAAAGGATCACCTTAATAATTGTTGCCTCTGATGACAATGCTAGTGATTTGCATCTTAATAGACTCTTAGATTTTGTCTTTAATTCCATGGTTTTGTTATTAGGAATAGATGAGTTGACATCTTTCAGAAATGTAGAACTGCTAAAGAGGGAATTGAGATGTTGTTATAGTTTGATTGACAGTCTCTTGGAAGGCACAGAGTTAACAGGAAACATTACTCAAGCTGTTGATATCATTCTTTGTCCAGATGTGTCATTTCTACAGGAGTTTCTGGATGCTTTTGCTACAGCAGTCAGCAGTGAGTTTGGATGTTTGCTTGTCATGGGAAAAGTGGCTGTAGCAACAGAACGATGGTGGGAGTTAACTGGCATGGAGACTGTCTTATTGTCATTGTTGGTTTATTCCTTACCACCATGGTCTTCTCGTGATATACCTATATATCTGCCATATGGTAGTCCAAAGattccTCACAGGTTGTTAACATTTCAACTCATTGAAGGTGTGGAGGTATGTGTGATATGTGGGCCTAAACCAACACTTCAGGATGCTGAAACCAAGTTTTTGGACCAGTATTGGAGACTTGCTATTGATACACTGAACACCAGTCGCAGATCTCATCCAAGAAATCTCCCTGGTGATATGGTACTCGATAGTGGAATCCTAGGGTTTGTGCTGGTGAACACAGATGAGCACAAGAGTCTGTCTAGTGTTCATCCATCAGGGGTGCTAACTGGTGTGGATCAAGGAAGTACCTCAGGAAGTGGAATGTCTACAGCTAAAAGAAAGTCAATTCTCGTGTCATTTTACAAGTCAGTTGTTGGTACTCTATTTCCTGTCCAGGAGCCAAATACCTCTGAACAAGATTCCCCCAGTGGTGTGTATCACCAAGCCATGGAGACTTACATATGTGCTAGTGATCATAAGTGTTATGCAATCCGTACAGCAACACATGAACTGttcttattgttttcaaatgaaGTACCAACCTATGCTCTCGGATCTCTAACCAGTGCTACACTTGCTCTTCTAACCAAAGGCAAGCTGGTATGACCCTGGGTACTCACCAGTCAGACGTCATCCACTACAACCTGTATTGCTGATCATAATGAGTCTTCACGAGAACTTTGAAGAATCCCGGCATCTTTACCGCGAGATATTCCTTCGCCAAATTGCAACCTGCTACTGTTGCACTATCTTCACTGGTGCTCTAAGTGTAGCAAAGTCTCTGGCAACTGTATCATGTGAAAGTCTGCCAATTTACACGGATATGTGTCAGAGTGCCTGTGTCATATGTACAGAATTAGTGTTTATATTCGCACAGTTATTAAAGCCGTCTAGAGTGAACACGTATCTTTGTACagattttgaatgaaaaacaaaacaatgaaagttCAAGGTAGAGCTTCAACGATATTAGCGGTTGATGAAATTTagacatatttttttgtttcctttctggaaaagaatttttgagaaaaaaatttaaatgaaaaaggcTTCTTAAAAAGTCACCAAATCAAAGAAAGTCTTTTCCAACTTTTTCTGTTGTTGATGGAGAAGTTACTTATTAAATGTTCTCACCTCTCTTGCGTGTAAAAATCGCCTTACTTTCCTTTCCCCATACTAATGAGTTAACCAAAATATCGTATCGAGGTAAGTCGGCGATTGGTCATTCAAACTGCATGGcatgacctttttttttttaatgtgtaatCATGCAACGGGAACGATTTGAACACCTACTGATGTATGATCGTGTAACCATCACTATAGAATTAAAGGATTTGAAACTGTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19036 all species →	Fuz_longin_1	First Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan
PF19037 all species →	Fuz_longin_2	Second Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan
PF19038 all species →	Fuz_longin_3	Third Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043972 all species →	Domain	FUZ/MON1/HPS1, first Longin domain	Interproscan
IPR026069 all species →	Family	Fuzzy protein	Interproscan
IPR043971 all species →	Domain	FUZ/MON1/HPS1, second Longin domain	Interproscan
IPR043970 all species →	Domain	FUZ/MON1/HPS1, third Longin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13559 all species →	INTRACELLULAR TRAFFIC PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22861	FUZ, CPLANE3; protein fuzzy	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.