Gene detail

Detailed information of XP_058972625.2 in Pocillopora verrucosa

Genomic Location: chr3:29946296...29958663
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059116642.2

aaagaaactattcaagatggcggaaaatatttgacttttGAGGAGCATTTCCATAGCCTTAAAATACACCTCATATCCAGCTCTTTTGTGTGTAGTCAGTGCGAGAGAAATGGGTCTCTTGTCAGATGTTCGAGGACGGAAGAAAATTGTGGATGTTTTAGTAACTCATTGCTCAAAGCTGTGTGTTCTCAGTTACATTATTGGTATCATCTGGCTGTGTGCTTTATCTGATCGCACATTCAATGGTCGTGTTTATTTCTCTGAGAATGCATTGTTGCCTGGTTTGGTTGAAGCAGAATTCAAGAATCACAGACTTGCTTCAGAGTTATTTGGGAAGTTATCAACTCTTCCAGAGGGAGATATTAGCAATGCTGCATCACAGATGATCACAAACACAATGGAAAACATTGGTCTTTACACTTACCAACAGAACTTCACAGTTTACACACCATTTCCTGGCATTTCTGAGCCACGTGTGATAAATGGCGTAAATATTTATGGGATTCTTAGAGCTCCCAGGATTGCAGGCACTGAAGCACTTGTTATCAGTGTCCCGTACAATCAAGGGAACAATAAAGGAGCCTTAGCACTAATGTTGTCATTTGCTGACCATTGTAGAAGGAAAAGTTACTGGTCAAAGGATATCATTTTTCTTGTGACTGATAGAGATCAACTTGGTATGCAAGCTTGGCTTGATGCATACCATGGTGTTACAAATTCTTATATTTCTTCTGCTCCTCTTGAGGGACATTCTGGTTCCATACAAGCTGCACTGAACTTGGAATTTCTGCATGAGAAAGTGAACTTCTTTAAGATTGCCATTGAAGGAATTAATGGACAGCTTCCTAATCTTGATCTAGTAAATACCGTGTTCAGGATGTGTCGCAAAGAGCATGTTCCAGTTTCTCTACACACAGAGGGATATCATGAACACCTGGGACCTTGGGCAGATTCTGTGCAATCCCTTGTTACCATGGTGATAATGATGTTTTACCAGGCCTCTGGAAGGGCTTCTGGCAATCATGGCTTGTTTCACAGATATCGTATTGAAGCTGTTACAATGAGGGGTGGCGGAGAAACCTTTCAGTATGGGCGTGGATTTCAGGAGACTGGAAGAGTCATTGAGGGTATATTCCGTAGCTTGAACAACCTCCTGGAGCAATTTCACCAATCATTCTTCTTCTACCTTCTACCTGAGTCTAATCGCTATGTATCAATTGGCCTGTACATGCCTCCCTTTGGCTGCCTTCTGTTAGGTCCTCTGATCATGGCTATCGTGATGTGGGTATTAGCCGGGTCTGCTCCAGAAAATGGCTCAAAAGTTGACACCTCACAAGACGAAGCATCGAAGGAAGAAGCTAAATTTAAAACAGCTGAGGTGGAAAGTCGTGAAGAAAAAAGTGGTGATACTGGAAAGGAAATCCCTAATTTAGAAACTGAGGTAGCATTTTTGAAGTATCCTCCTGACATCGGAAGCGTCGTGCCTATTGCCATGGCAACACACGTGGCTGGTGTTGTAGTGTTTTATTCTCCAGAGCTTAGTTATAAACTGGGACAAGCGACAGGACTAGATCCTTTGCTATGTACATATGTTGGAATGGCTGTCTCCTTCCTTGTGGTAGTACTTCTTCCTTTTATCACAAGGTATTCGAGTGACGTAAGCTCTCATCATGTGACCCTTCGAAGCCATTATATGCTCAAATGTGGAGCTTTGATACTCTTCTCTGTTCTCATGGGAGCAATGGCGGCCATAAATTTCTCTCTGGCCTTTTTGGTTAGCATGTTCCAAGTGCCTGTATACCTGTTGGTGGCCCCTTGGGGGAGGAGGAGTCGCCGTCTTCTCCAAGCAGTGCTACTAGTTTTGGTATCGCCGCCGATGATTCTATTTCTCCTTTCGCTGGCCTATAACGTAATTGTCTCACAAACCGAAGCTAACATCAACATCATACTTCAATCCACTCTTACAACTGTCTGCCAAACCGTGACGTCATCAATAAAAGAAGCCCGGATGTTGGGCACGTGGTCCTTTGCGATGACGTGTCTTGGGATTTTGCCCAACTGGCTTATGTTTTGGTGTTTAGCGTGGCGCTGAAATATGAACTAAATTACCTAAGGTCTTACGTTTGATTCTTCATGGTTTGATTTCTTTGTCTCATGCTGGCgataagaagaaattagaactTCTTGGGAGTCTTTTCAAATCCTTTTAAAGATATTTACCGGGAAAGTTCTGACTTATGAAGTCATTTCGAAACATGGGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04114 all species →	Gaa1	Gaa1-like, GPI transamidase component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007246 all species →	Family	GPI transamidase component Gaa1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13304 all species →	GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05289	GAA1; GPI-anchor transamidase subunit GAA1	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.